miRNA display CGI


Results 61 - 80 of 613 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23591 3' -66.5 NC_005261.1 + 88140 0.75 0.118346
Target:  5'- uCGCGcCGcGCGgggGCGCCCcggccgcgcaGCCGGGCCg -3'
miRNA:   3'- -GCGCaGC-CGCag-CGCGGG----------CGGCCCGG- -5'
23591 3' -66.5 NC_005261.1 + 88565 0.75 0.124189
Target:  5'- aGCGcCGGCGaCGCGUcccgcuucgCCGCCGaGGCCc -3'
miRNA:   3'- gCGCaGCCGCaGCGCG---------GGCGGC-CCGG- -5'
23591 3' -66.5 NC_005261.1 + 64813 0.75 0.124189
Target:  5'- aCGCG-CGcGCG-CGCGCCgcgCGCCGGGUCc -3'
miRNA:   3'- -GCGCaGC-CGCaGCGCGG---GCGGCCCGG- -5'
23591 3' -66.5 NC_005261.1 + 106115 0.75 0.124189
Target:  5'- gGCGUcgcCGGCG-CGCGCgCGCCGGcaacGCCg -3'
miRNA:   3'- gCGCA---GCCGCaGCGCGgGCGGCC----CGG- -5'
23591 3' -66.5 NC_005261.1 + 47126 0.75 0.12721
Target:  5'- gCGCGUCcaGGuCGUCGCGCacagCGCCGGcGUCg -3'
miRNA:   3'- -GCGCAG--CC-GCAGCGCGg---GCGGCC-CGG- -5'
23591 3' -66.5 NC_005261.1 + 2673 0.75 0.129986
Target:  5'- cCGCGcuggggaccCGGCGgCGCGCCggcuuuuggccggCGCCGGGCCc -3'
miRNA:   3'- -GCGCa--------GCCGCaGCGCGG-------------GCGGCCCGG- -5'
23591 3' -66.5 NC_005261.1 + 14751 0.75 0.130298
Target:  5'- gGCGaUCGGCGcCGCGCCgCGaCagggGGGCCg -3'
miRNA:   3'- gCGC-AGCCGCaGCGCGG-GC-Gg---CCCGG- -5'
23591 3' -66.5 NC_005261.1 + 105977 0.75 0.130298
Target:  5'- aGCG-CGGCGUCGacgcCGCCCGCgaaGGCCa -3'
miRNA:   3'- gCGCaGCCGCAGC----GCGGGCGgc-CCGG- -5'
23591 3' -66.5 NC_005261.1 + 115844 0.75 0.130298
Target:  5'- gCGCGUUGGCccgCGCGgccCCCGCCGaGGCg -3'
miRNA:   3'- -GCGCAGCCGca-GCGC---GGGCGGC-CCGg -5'
23591 3' -66.5 NC_005261.1 + 103451 0.75 0.133456
Target:  5'- uCGCgGUCGGcCGcCGCGCCCGUCgccaGGGCg -3'
miRNA:   3'- -GCG-CAGCC-GCaGCGCGGGCGG----CCCGg -5'
23591 3' -66.5 NC_005261.1 + 99803 0.75 0.133456
Target:  5'- gCGCGgauGGCGaacagCGCGCcguCCGCCGGGUCg -3'
miRNA:   3'- -GCGCag-CCGCa----GCGCG---GGCGGCCCGG- -5'
23591 3' -66.5 NC_005261.1 + 4576 0.75 0.133456
Target:  5'- gGCGggucCGGCGggGCGCCCcCCGGcGCCa -3'
miRNA:   3'- gCGCa---GCCGCagCGCGGGcGGCC-CGG- -5'
23591 3' -66.5 NC_005261.1 + 120442 0.74 0.136358
Target:  5'- uGCG-CGGCGU-GCGCCUGCucuccgcgauagaCGGGCCc -3'
miRNA:   3'- gCGCaGCCGCAgCGCGGGCG-------------GCCCGG- -5'
23591 3' -66.5 NC_005261.1 + 51773 0.74 0.136684
Target:  5'- gGCGcuggcCGGCGUCGCccuGCUgGCCGuGGCCa -3'
miRNA:   3'- gCGCa----GCCGCAGCG---CGGgCGGC-CCGG- -5'
23591 3' -66.5 NC_005261.1 + 134101 0.74 0.136684
Target:  5'- gCGCGcCGGCG-CGCGCUCGCC--GCCg -3'
miRNA:   3'- -GCGCaGCCGCaGCGCGGGCGGccCGG- -5'
23591 3' -66.5 NC_005261.1 + 117483 0.74 0.136684
Target:  5'- aCGCGcugCuGCGcuucuaccUUGCGCCCGCCGGcGCCg -3'
miRNA:   3'- -GCGCa--GcCGC--------AGCGCGGGCGGCC-CGG- -5'
23591 3' -66.5 NC_005261.1 + 102583 0.74 0.136684
Target:  5'- cCGCGUCGGCGgccucgccCGCGCCuuccgcguccuCGCCGccagcGGCCu -3'
miRNA:   3'- -GCGCAGCCGCa-------GCGCGG-----------GCGGC-----CCGG- -5'
23591 3' -66.5 NC_005261.1 + 5130 0.74 0.136684
Target:  5'- gGCGgcccgcCGGCGcUCGCgcgccucgGCCCGgCGGGCCg -3'
miRNA:   3'- gCGCa-----GCCGC-AGCG--------CGGGCgGCCCGG- -5'
23591 3' -66.5 NC_005261.1 + 2006 0.74 0.137995
Target:  5'- uCGCGggguccaCGGCGUCGaucacgaucagccgcCGCCgCGCCGcGGCCa -3'
miRNA:   3'- -GCGCa------GCCGCAGC---------------GCGG-GCGGC-CCGG- -5'
23591 3' -66.5 NC_005261.1 + 40678 0.74 0.139984
Target:  5'- aCGcCGUCGGgGagccgGCGCCgGCCGGGCUc -3'
miRNA:   3'- -GC-GCAGCCgCag---CGCGGgCGGCCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.