miRNA display CGI


Results 81 - 100 of 613 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23591 3' -66.5 NC_005261.1 + 109506 0.74 0.139984
Target:  5'- cCGCGcccgccgCGGgGUuuauugCGCGCCCGCCgcGGGCCc -3'
miRNA:   3'- -GCGCa------GCCgCA------GCGCGGGCGG--CCCGG- -5'
23591 3' -66.5 NC_005261.1 + 126519 0.74 0.143356
Target:  5'- uGCcUgGGCGccCGCGCCCGCCGcGCCu -3'
miRNA:   3'- gCGcAgCCGCa-GCGCGGGCGGCcCGG- -5'
23591 3' -66.5 NC_005261.1 + 93684 0.74 0.143356
Target:  5'- gGCGcCGGCGggGCGCCgGCgGGuGCCu -3'
miRNA:   3'- gCGCaGCCGCagCGCGGgCGgCC-CGG- -5'
23591 3' -66.5 NC_005261.1 + 71400 0.74 0.146455
Target:  5'- aCGCGUgguaggCGGCGUCcggcgcgGgGCCCGgcCCGGGCCc -3'
miRNA:   3'- -GCGCA------GCCGCAG-------CgCGGGC--GGCCCGG- -5'
23591 3' -66.5 NC_005261.1 + 88467 0.74 0.146803
Target:  5'- gCGUGUgGGCGggcCGUGCCgCGCCGGaGCg -3'
miRNA:   3'- -GCGCAgCCGCa--GCGCGG-GCGGCC-CGg -5'
23591 3' -66.5 NC_005261.1 + 48671 0.74 0.146803
Target:  5'- gCGCGgcaaCGGCGacuaCGgGCCCG-CGGGCCa -3'
miRNA:   3'- -GCGCa---GCCGCa---GCgCGGGCgGCCCGG- -5'
23591 3' -66.5 NC_005261.1 + 62384 0.74 0.148202
Target:  5'- uGCGgcagCGGCaccgucGUggggaagagcagcucCGCGCCCGCCGaGGCCa -3'
miRNA:   3'- gCGCa---GCCG------CA---------------GCGCGGGCGGC-CCGG- -5'
23591 3' -66.5 NC_005261.1 + 118851 0.74 0.150325
Target:  5'- gCGCGgagGGCGgCGCGCCCGCgGcccuGGCCu -3'
miRNA:   3'- -GCGCag-CCGCaGCGCGGGCGgC----CCGG- -5'
23591 3' -66.5 NC_005261.1 + 13047 0.74 0.150325
Target:  5'- gCGCGgggCcGCG-CGCGCCCcuGCCGGGCg -3'
miRNA:   3'- -GCGCa--GcCGCaGCGCGGG--CGGCCCGg -5'
23591 3' -66.5 NC_005261.1 + 3438 0.74 0.150325
Target:  5'- aGCGUCcaGGCGggCGCGCgggCCGCCGcGCCg -3'
miRNA:   3'- gCGCAG--CCGCa-GCGCG---GGCGGCcCGG- -5'
23591 3' -66.5 NC_005261.1 + 137802 0.74 0.15356
Target:  5'- cCGCGcCGGCGcCGCcccugguGCUCGCgGGGCUg -3'
miRNA:   3'- -GCGCaGCCGCaGCG-------CGGGCGgCCCGG- -5'
23591 3' -66.5 NC_005261.1 + 119 0.74 0.15356
Target:  5'- cCGCGcCGGCGcCGCcccugguGCUCGCgGGGCUg -3'
miRNA:   3'- -GCGCaGCCGCaGCG-------CGGGCGgCCCGG- -5'
23591 3' -66.5 NC_005261.1 + 64695 0.74 0.153923
Target:  5'- gCGCGUccCGGgGcCGcCGCCgCGCaCGGGCCg -3'
miRNA:   3'- -GCGCA--GCCgCaGC-GCGG-GCG-GCCCGG- -5'
23591 3' -66.5 NC_005261.1 + 82048 0.74 0.153923
Target:  5'- uGCGUCaGCG-CGgGCCacguCGCCGGGUCg -3'
miRNA:   3'- gCGCAGcCGCaGCgCGG----GCGGCCCGG- -5'
23591 3' -66.5 NC_005261.1 + 73720 0.74 0.153923
Target:  5'- cCGCgGUCGGCGUgCGCGCuuGCgcgcgggggucCGGuGCCa -3'
miRNA:   3'- -GCG-CAGCCGCA-GCGCGggCG-----------GCC-CGG- -5'
23591 3' -66.5 NC_005261.1 + 3470 0.73 0.1576
Target:  5'- gCGCGUCGaGUacCGCGCCaGCgGGGCCa -3'
miRNA:   3'- -GCGCAGC-CGcaGCGCGGgCGgCCCGG- -5'
23591 3' -66.5 NC_005261.1 + 54889 0.73 0.1576
Target:  5'- uGCGUCGGCG-CGCGCgUGCCGcaGCg -3'
miRNA:   3'- gCGCAGCCGCaGCGCGgGCGGCc-CGg -5'
23591 3' -66.5 NC_005261.1 + 67313 0.73 0.159093
Target:  5'- cCGcCGUCGGCcgccGcCGCGCUcagccgcaggaacagCGCCGGGCCc -3'
miRNA:   3'- -GC-GCAGCCG----CaGCGCGG---------------GCGGCCCGG- -5'
23591 3' -66.5 NC_005261.1 + 39461 0.73 0.161356
Target:  5'- cCGCG-CGGCG-CgGCGCCCcaaCGGGCCc -3'
miRNA:   3'- -GCGCaGCCGCaG-CGCGGGcg-GCCCGG- -5'
23591 3' -66.5 NC_005261.1 + 59467 0.73 0.161356
Target:  5'- gGCGUCGGgGggcagcgccggCGCGgCCGCCGcGCCa -3'
miRNA:   3'- gCGCAGCCgCa----------GCGCgGGCGGCcCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.