miRNA display CGI


Results 101 - 120 of 613 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23591 3' -66.5 NC_005261.1 + 39461 0.73 0.161356
Target:  5'- cCGCG-CGGCG-CgGCGCCCcaaCGGGCCc -3'
miRNA:   3'- -GCGCaGCCGCaG-CGCGGGcg-GCCCGG- -5'
23591 3' -66.5 NC_005261.1 + 110238 0.73 0.161356
Target:  5'- aGCGUgGGCGgcgCgGCGCCCGgggggcugCGGGCCu -3'
miRNA:   3'- gCGCAgCCGCa--G-CGCGGGCg-------GCCCGG- -5'
23591 3' -66.5 NC_005261.1 + 59467 0.73 0.161356
Target:  5'- gGCGUCGGgGggcagcgccggCGCGgCCGCCGcGCCa -3'
miRNA:   3'- gCGCAGCCgCa----------GCGCgGGCGGCcCGG- -5'
23591 3' -66.5 NC_005261.1 + 6335 0.73 0.164805
Target:  5'- cCGCGUacccccugcccacCGGCcUCGCGCCgGuCCGGcGCCg -3'
miRNA:   3'- -GCGCA-------------GCCGcAGCGCGGgC-GGCC-CGG- -5'
23591 3' -66.5 NC_005261.1 + 93770 0.73 0.164805
Target:  5'- gCGCG-CGGCGUCGCagcagguGCCC-CCGGgacGCCg -3'
miRNA:   3'- -GCGCaGCCGCAGCG-------CGGGcGGCC---CGG- -5'
23591 3' -66.5 NC_005261.1 + 127878 0.73 0.165192
Target:  5'- aGCGggagucGCGcCgGCGCCCGUCGGGCCc -3'
miRNA:   3'- gCGCagc---CGCaG-CGCGGGCGGCCCGG- -5'
23591 3' -66.5 NC_005261.1 + 1168 0.73 0.165192
Target:  5'- gCGCGcCGGCc-CGCGCCgCgGCCGgGGCCg -3'
miRNA:   3'- -GCGCaGCCGcaGCGCGG-G-CGGC-CCGG- -5'
23591 3' -66.5 NC_005261.1 + 32502 0.73 0.165192
Target:  5'- gGCGgcaUCGGCGgggggucCGCGCCgCGCCcGGCCc -3'
miRNA:   3'- gCGC---AGCCGCa------GCGCGG-GCGGcCCGG- -5'
23591 3' -66.5 NC_005261.1 + 53787 0.73 0.165192
Target:  5'- gGuCGUCGcCGUCGCcuucGCCCGCCGccucGGCCa -3'
miRNA:   3'- gC-GCAGCcGCAGCG----CGGGCGGC----CCGG- -5'
23591 3' -66.5 NC_005261.1 + 33750 0.73 0.165192
Target:  5'- gGCGcCGGgGcCGgGCCCGCUcgcgGGGCCc -3'
miRNA:   3'- gCGCaGCCgCaGCgCGGGCGG----CCCGG- -5'
23591 3' -66.5 NC_005261.1 + 64314 0.73 0.165192
Target:  5'- uCGCGUcgCGGcCGUagcCGUGCCCGCgucaGGGCCc -3'
miRNA:   3'- -GCGCA--GCC-GCA---GCGCGGGCGg---CCCGG- -5'
23591 3' -66.5 NC_005261.1 + 56111 0.73 0.172707
Target:  5'- gCGCGagCGGCGggaGCGCgCCGCagggcggggggcgCGGGCCg -3'
miRNA:   3'- -GCGCa-GCCGCag-CGCG-GGCG-------------GCCCGG- -5'
23591 3' -66.5 NC_005261.1 + 83554 0.73 0.173111
Target:  5'- gCGCGaagaacUCGGCGggCGUGCCCGCggcgccCGcGGCCg -3'
miRNA:   3'- -GCGC------AGCCGCa-GCGCGGGCG------GC-CCGG- -5'
23591 3' -66.5 NC_005261.1 + 15171 0.73 0.173111
Target:  5'- gGCGUagCGGCGgcgGCGCCCGCgGGaaacGCCg -3'
miRNA:   3'- gCGCA--GCCGCag-CGCGGGCGgCC----CGG- -5'
23591 3' -66.5 NC_005261.1 + 75584 0.73 0.173111
Target:  5'- gGCGgcgCGGCGcUCGCGCgCGCCGcGGaCg -3'
miRNA:   3'- gCGCa--GCCGC-AGCGCGgGCGGC-CCgG- -5'
23591 3' -66.5 NC_005261.1 + 121667 0.73 0.173111
Target:  5'- cCGCGUCGGCGUagguguagGCGCCCuCCaGGUUg -3'
miRNA:   3'- -GCGCAGCCGCAg-------CGCGGGcGGcCCGG- -5'
23591 3' -66.5 NC_005261.1 + 21784 0.73 0.173111
Target:  5'- cCGCGgcgCGGgcCGcCGCagccGCCgGCCGGGCCg -3'
miRNA:   3'- -GCGCa--GCC--GCaGCG----CGGgCGGCCCGG- -5'
23591 3' -66.5 NC_005261.1 + 92156 0.73 0.173111
Target:  5'- ---cUCGGCGagCGCGCgcucgguggagCCGCCGGGCCc -3'
miRNA:   3'- gcgcAGCCGCa-GCGCG-----------GGCGGCCCGG- -5'
23591 3' -66.5 NC_005261.1 + 29768 0.73 0.174735
Target:  5'- uGCGgCGcGCGUaCGCGCCCauggccuacccggagGCCGGcGCCg -3'
miRNA:   3'- gCGCaGC-CGCA-GCGCGGG---------------CGGCC-CGG- -5'
23591 3' -66.5 NC_005261.1 + 6432 0.73 0.177196
Target:  5'- uCGCGagGGCgGUCcggGgGCCgGCCGGGCUg -3'
miRNA:   3'- -GCGCagCCG-CAG---CgCGGgCGGCCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.