miRNA display CGI


Results 121 - 140 of 613 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23591 3' -66.5 NC_005261.1 + 29871 0.73 0.177196
Target:  5'- gGCGcCGGCGcCGCuGCCgccagCGcCCGGGCCc -3'
miRNA:   3'- gCGCaGCCGCaGCG-CGG-----GC-GGCCCGG- -5'
23591 3' -66.5 NC_005261.1 + 118991 0.73 0.177196
Target:  5'- uGCuUCuGCGUCGgGgCCUGCUGGGCCc -3'
miRNA:   3'- gCGcAGcCGCAGCgC-GGGCGGCCCGG- -5'
23591 3' -66.5 NC_005261.1 + 95787 0.73 0.177196
Target:  5'- uGCGcCGGCG-CGCuGCuaGCCGGcGCCg -3'
miRNA:   3'- gCGCaGCCGCaGCG-CGggCGGCC-CGG- -5'
23591 3' -66.5 NC_005261.1 + 38509 0.73 0.177196
Target:  5'- aGCGUCguauaaGGCG-CGCGCUggcugcgcgCGCCGGGCa -3'
miRNA:   3'- gCGCAG------CCGCaGCGCGG---------GCGGCCCGg -5'
23591 3' -66.5 NC_005261.1 + 72697 0.73 0.180945
Target:  5'- gGCG-CGccagguccgccaGCGUCGCGCCCGCCgccccguccgcgcGGGCg -3'
miRNA:   3'- gCGCaGC------------CGCAGCGCGGGCGG-------------CCCGg -5'
23591 3' -66.5 NC_005261.1 + 39792 0.73 0.181366
Target:  5'- cCGgGg-GGCGgCGCGgCCGCCGGcGCCa -3'
miRNA:   3'- -GCgCagCCGCaGCGCgGGCGGCC-CGG- -5'
23591 3' -66.5 NC_005261.1 + 109986 0.73 0.181366
Target:  5'- aCGCccCGGCagGUCGUcguggacacGCCCGCCGGcGCCg -3'
miRNA:   3'- -GCGcaGCCG--CAGCG---------CGGGCGGCC-CGG- -5'
23591 3' -66.5 NC_005261.1 + 125323 0.72 0.185194
Target:  5'- cCGCGgccUCGGCGUCcgcagcgcgcaggGCGUccagcaggcuCCGCCGGGCa -3'
miRNA:   3'- -GCGC---AGCCGCAG-------------CGCG----------GGCGGCCCGg -5'
23591 3' -66.5 NC_005261.1 + 86268 0.72 0.185624
Target:  5'- aCGCGUgcCGGuCGUCGCgcgagcacaGCCCGCaGGGCa -3'
miRNA:   3'- -GCGCA--GCC-GCAGCG---------CGGGCGgCCCGg -5'
23591 3' -66.5 NC_005261.1 + 15696 0.72 0.185624
Target:  5'- aGCG-CGaGCGUUGCGUCgGCUGGGUg -3'
miRNA:   3'- gCGCaGC-CGCAGCGCGGgCGGCCCGg -5'
23591 3' -66.5 NC_005261.1 + 136608 0.72 0.185624
Target:  5'- gCGUGgagCGGCG-CGCGCgCGCCgaGGGCg -3'
miRNA:   3'- -GCGCa--GCCGCaGCGCGgGCGG--CCCGg -5'
23591 3' -66.5 NC_005261.1 + 86206 0.72 0.185624
Target:  5'- cCGCGUCGGCG-CGCcgaaccgggGCa-GCCGGuGCCg -3'
miRNA:   3'- -GCGCAGCCGCaGCG---------CGggCGGCC-CGG- -5'
23591 3' -66.5 NC_005261.1 + 94854 0.72 0.185624
Target:  5'- gGCcUCGGCGcUCGCGCaCgGCCcGGGCg -3'
miRNA:   3'- gCGcAGCCGC-AGCGCG-GgCGG-CCCGg -5'
23591 3' -66.5 NC_005261.1 + 138005 0.72 0.185624
Target:  5'- gGCGgcugCGGCGgccCGCaGCCCGgCGcGGCCc -3'
miRNA:   3'- gCGCa---GCCGCa--GCG-CGGGCgGC-CCGG- -5'
23591 3' -66.5 NC_005261.1 + 334 0.72 0.185624
Target:  5'- gGCGgcugCGGCGgccCGCaGCCCGgCGcGGCCc -3'
miRNA:   3'- gCGCa---GCCGCa--GCG-CGGGCgGC-CCGG- -5'
23591 3' -66.5 NC_005261.1 + 96985 0.72 0.189969
Target:  5'- aCGCGgccUCGGCGcggcuaagCGCGCCauugGgCGGGCCg -3'
miRNA:   3'- -GCGC---AGCCGCa-------GCGCGGg---CgGCCCGG- -5'
23591 3' -66.5 NC_005261.1 + 92793 0.72 0.189969
Target:  5'- gGgGUCGGgGUC-CGgUCGCCGGGCg -3'
miRNA:   3'- gCgCAGCCgCAGcGCgGGCGGCCCGg -5'
23591 3' -66.5 NC_005261.1 + 117666 0.72 0.189969
Target:  5'- aGCGcCc-CGcCGCGCCCgGCCGGGCCc -3'
miRNA:   3'- gCGCaGccGCaGCGCGGG-CGGCCCGG- -5'
23591 3' -66.5 NC_005261.1 + 90227 0.72 0.189969
Target:  5'- uCGCG-CGGCGggcggGCGCgCCGUCGGGUa -3'
miRNA:   3'- -GCGCaGCCGCag---CGCG-GGCGGCCCGg -5'
23591 3' -66.5 NC_005261.1 + 31057 0.72 0.194403
Target:  5'- aGCG-CGGCGggagccgcCGCuGCCCGCCcgcgugcuGGGCCc -3'
miRNA:   3'- gCGCaGCCGCa-------GCG-CGGGCGG--------CCCGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.