miRNA display CGI


Results 21 - 40 of 613 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23591 3' -66.5 NC_005261.1 + 133653 0.66 0.479687
Target:  5'- uGCG-CGaGCGcugCGUGCUCGCCuccGGcGCCa -3'
miRNA:   3'- gCGCaGC-CGCa--GCGCGGGCGG---CC-CGG- -5'
23591 3' -66.5 NC_005261.1 + 13856 0.66 0.479687
Target:  5'- uCGuCGcCGGCGUCGcCGgCgGCCcGGUCg -3'
miRNA:   3'- -GC-GCaGCCGCAGC-GCgGgCGGcCCGG- -5'
23591 3' -66.5 NC_005261.1 + 33605 0.66 0.479687
Target:  5'- gGCGcCGGCG-CGgG-CgGCgGGGCCc -3'
miRNA:   3'- gCGCaGCCGCaGCgCgGgCGgCCCGG- -5'
23591 3' -66.5 NC_005261.1 + 38605 0.66 0.479687
Target:  5'- cCGCGgcuGGCGg-GUGUUgGCCGcGGCCg -3'
miRNA:   3'- -GCGCag-CCGCagCGCGGgCGGC-CCGG- -5'
23591 3' -66.5 NC_005261.1 + 61953 0.66 0.479687
Target:  5'- gCGCGcCGaccGCGUC-C-CCCaGCCGGGUCg -3'
miRNA:   3'- -GCGCaGC---CGCAGcGcGGG-CGGCCCGG- -5'
23591 3' -66.5 NC_005261.1 + 121388 0.66 0.479687
Target:  5'- cCGCGgCGGCGgCGCcuGCCCGagugcgaCGGcuGCCg -3'
miRNA:   3'- -GCGCaGCCGCaGCG--CGGGCg------GCC--CGG- -5'
23591 3' -66.5 NC_005261.1 + 43775 0.66 0.478813
Target:  5'- uCGUGgggCGGCGcgcggaggGCGCCgcgggugagggggCGCCGGGCg -3'
miRNA:   3'- -GCGCa--GCCGCag------CGCGG-------------GCGGCCCGg -5'
23591 3' -66.5 NC_005261.1 + 67800 0.66 0.474455
Target:  5'- cCGCcUCGGCGccgcccaguggcaacUCggGCGCgCGCaggaGGGCCg -3'
miRNA:   3'- -GCGcAGCCGC---------------AG--CGCGgGCGg---CCCGG- -5'
23591 3' -66.5 NC_005261.1 + 109342 0.66 0.474455
Target:  5'- gGgGUCGGCGgcCGCGUcgccguccagCCGCUcgagcgcggcccagaGGGCCc -3'
miRNA:   3'- gCgCAGCCGCa-GCGCG----------GGCGG---------------CCCGG- -5'
23591 3' -66.5 NC_005261.1 + 57790 0.66 0.470983
Target:  5'- gGCGUCGcGCGgCGgGCgCGCgaaGGCCg -3'
miRNA:   3'- gCGCAGC-CGCaGCgCGgGCGgc-CCGG- -5'
23591 3' -66.5 NC_005261.1 + 62839 0.66 0.470983
Target:  5'- gGCGggggacUGGCGcgcccCGCGCCaCGCgGcGGCCu -3'
miRNA:   3'- gCGCa-----GCCGCa----GCGCGG-GCGgC-CCGG- -5'
23591 3' -66.5 NC_005261.1 + 104440 0.66 0.470983
Target:  5'- aGCGggcCcGCGUCGC-CgCCGCCGGcggcGCCg -3'
miRNA:   3'- gCGCa--GcCGCAGCGcG-GGCGGCC----CGG- -5'
23591 3' -66.5 NC_005261.1 + 71489 0.66 0.470983
Target:  5'- uGCG-CGGCGgccaggugCGCGCgaaagUCGgCGGGCUc -3'
miRNA:   3'- gCGCaGCCGCa-------GCGCG-----GGCgGCCCGG- -5'
23591 3' -66.5 NC_005261.1 + 78840 0.66 0.470983
Target:  5'- uGCGguacgcCGGCG--GCGCCCGCC--GCCg -3'
miRNA:   3'- gCGCa-----GCCGCagCGCGGGCGGccCGG- -5'
23591 3' -66.5 NC_005261.1 + 121632 0.66 0.470983
Target:  5'- cCGC-UCGGCGgcCGcCGCCgGCgagcgCGGGCUg -3'
miRNA:   3'- -GCGcAGCCGCa-GC-GCGGgCG-----GCCCGG- -5'
23591 3' -66.5 NC_005261.1 + 15226 0.66 0.470983
Target:  5'- uCGCcgaGcCGGCGUUGaggcccCGCUCGCaguGGGCCg -3'
miRNA:   3'- -GCG---CaGCCGCAGC------GCGGGCGg--CCCGG- -5'
23591 3' -66.5 NC_005261.1 + 28188 0.66 0.470983
Target:  5'- gCGCGccgaagcCGGCGgccUCGcCGCCgcUGCCGcGGCCc -3'
miRNA:   3'- -GCGCa------GCCGC---AGC-GCGG--GCGGC-CCGG- -5'
23591 3' -66.5 NC_005261.1 + 17824 0.66 0.470117
Target:  5'- gGCGUUGcacuccaGCGagGCGuUCCGCaGGGCCu -3'
miRNA:   3'- gCGCAGC-------CGCagCGC-GGGCGgCCCGG- -5'
23591 3' -66.5 NC_005261.1 + 99854 0.66 0.468388
Target:  5'- aGCGgcacCGGcCGcCGCGCgCCGCCgccgcucggcgcgaGGGCg -3'
miRNA:   3'- gCGCa---GCC-GCaGCGCG-GGCGG--------------CCCGg -5'
23591 3' -66.5 NC_005261.1 + 127674 0.66 0.462361
Target:  5'- gGCGggacggCGGCGgcCGCuGcCCCGgCGGcGCCg -3'
miRNA:   3'- gCGCa-----GCCGCa-GCG-C-GGGCgGCC-CGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.