miRNA display CGI


Results 41 - 60 of 613 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23591 3' -66.5 NC_005261.1 + 123728 0.66 0.462361
Target:  5'- aGCGUCGucGCgGUC-CGCaCCGCCaguaGGCCu -3'
miRNA:   3'- gCGCAGC--CG-CAGcGCG-GGCGGc---CCGG- -5'
23591 3' -66.5 NC_005261.1 + 55409 0.66 0.462361
Target:  5'- uGCaUCuacGCG-CGCGCCgGCUGGcGCCa -3'
miRNA:   3'- gCGcAGc--CGCaGCGCGGgCGGCC-CGG- -5'
23591 3' -66.5 NC_005261.1 + 102429 0.66 0.462361
Target:  5'- uGCG-CGGCcgccuccUCgGCGCgCCGCCcGGCCu -3'
miRNA:   3'- gCGCaGCCGc------AG-CGCG-GGCGGcCCGG- -5'
23591 3' -66.5 NC_005261.1 + 39965 0.66 0.462361
Target:  5'- uCGCGcaggcUCaGCGgguugCGCGCgCCGCCGGcGUg -3'
miRNA:   3'- -GCGC-----AGcCGCa----GCGCG-GGCGGCC-CGg -5'
23591 3' -66.5 NC_005261.1 + 57539 0.66 0.462361
Target:  5'- gGCG-CGGCGcacgggcacacgUcgcaCGCGCCCGgcuCCGGcGCCg -3'
miRNA:   3'- gCGCaGCCGC------------A----GCGCGGGC---GGCC-CGG- -5'
23591 3' -66.5 NC_005261.1 + 73150 0.66 0.462361
Target:  5'- uCGCGccgccaggCGGCGUUGuUGCUCGgCCGGGg- -3'
miRNA:   3'- -GCGCa-------GCCGCAGC-GCGGGC-GGCCCgg -5'
23591 3' -66.5 NC_005261.1 + 76364 0.66 0.462361
Target:  5'- cCGCG-CGcGCGUgcaccCGCGCugCCGCCGccaacauaaaaaGGCCg -3'
miRNA:   3'- -GCGCaGC-CGCA-----GCGCG--GGCGGC------------CCGG- -5'
23591 3' -66.5 NC_005261.1 + 100506 0.66 0.462361
Target:  5'- uGcCGUCGGCGUCcagGUagCCGCgCGGcGCCa -3'
miRNA:   3'- gC-GCAGCCGCAGcg-CG--GGCG-GCC-CGG- -5'
23591 3' -66.5 NC_005261.1 + 127674 0.66 0.462361
Target:  5'- gGCGggacggCGGCGgcCGCuGcCCCGgCGGcGCCg -3'
miRNA:   3'- gCGCa-----GCCGCa-GCG-C-GGGCgGCC-CGG- -5'
23591 3' -66.5 NC_005261.1 + 47033 0.66 0.462361
Target:  5'- cCGCGaCGGCGgCGCuGUCCaGaaagucccaCGGGCCg -3'
miRNA:   3'- -GCGCaGCCGCaGCG-CGGG-Cg--------GCCCGG- -5'
23591 3' -66.5 NC_005261.1 + 87734 0.66 0.461503
Target:  5'- gGUGggCcGCGUCGCagacguacacgaaGCCCG-CGGGCCc -3'
miRNA:   3'- gCGCa-GcCGCAGCG-------------CGGGCgGCCCGG- -5'
23591 3' -66.5 NC_005261.1 + 75657 0.66 0.45979
Target:  5'- gCGCGUuccUGGCG-CGCGCgcagaaccucuuccUCGCCGaGGaCCa -3'
miRNA:   3'- -GCGCA---GCCGCaGCGCG--------------GGCGGC-CC-GG- -5'
23591 3' -66.5 NC_005261.1 + 36554 0.66 0.45979
Target:  5'- gGCGg-GGCGagccuaGCcgagcugagcggggGCCCGCCGcGGCCa -3'
miRNA:   3'- gCGCagCCGCag----CG--------------CGGGCGGC-CCGG- -5'
23591 3' -66.5 NC_005261.1 + 78084 0.66 0.453821
Target:  5'- gGCGcUGGCcccCGCGCCgGCCcaGGCCc -3'
miRNA:   3'- gCGCaGCCGca-GCGCGGgCGGc-CCGG- -5'
23591 3' -66.5 NC_005261.1 + 118192 0.66 0.453821
Target:  5'- cCGCG--GGCccCGCGCCUGCCGcGCUg -3'
miRNA:   3'- -GCGCagCCGcaGCGCGGGCGGCcCGG- -5'
23591 3' -66.5 NC_005261.1 + 122327 0.66 0.453821
Target:  5'- gGCGgucaggUGGCGcUCGCagaGCUCGCCuggcGGCCg -3'
miRNA:   3'- gCGCa-----GCCGC-AGCG---CGGGCGGc---CCGG- -5'
23591 3' -66.5 NC_005261.1 + 130636 0.66 0.453821
Target:  5'- gCGCGgggCGcGCGU-GCGCUCGCCGacgcGCUg -3'
miRNA:   3'- -GCGCa--GC-CGCAgCGCGGGCGGCc---CGG- -5'
23591 3' -66.5 NC_005261.1 + 71071 0.66 0.453821
Target:  5'- cCGCG-CGGCGg-GCGgggCGuCCGGGCCc -3'
miRNA:   3'- -GCGCaGCCGCagCGCgg-GC-GGCCCGG- -5'
23591 3' -66.5 NC_005261.1 + 78143 0.66 0.453821
Target:  5'- cCGCccCGGCGccCGcCGCugCCGgCGGGCCa -3'
miRNA:   3'- -GCGcaGCCGCa-GC-GCG--GGCgGCCCGG- -5'
23591 3' -66.5 NC_005261.1 + 74839 0.66 0.453821
Target:  5'- uCGCGgaccUGGgGagGCGgCgCGCCGGGCg -3'
miRNA:   3'- -GCGCa---GCCgCagCGCgG-GCGGCCCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.