miRNA display CGI


Results 61 - 80 of 613 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23591 3' -66.5 NC_005261.1 + 63039 0.66 0.453821
Target:  5'- cCGCGgcgaGGCgGUCGCGCagcagCGCCGcGUCg -3'
miRNA:   3'- -GCGCag--CCG-CAGCGCGg----GCGGCcCGG- -5'
23591 3' -66.5 NC_005261.1 + 64867 0.66 0.453821
Target:  5'- uCGCGUcccagaucagCGGCGgCGgGagCGCCGGGUCc -3'
miRNA:   3'- -GCGCA----------GCCGCaGCgCggGCGGCCCGG- -5'
23591 3' -66.5 NC_005261.1 + 74839 0.66 0.453821
Target:  5'- uCGCGgaccUGGgGagGCGgCgCGCCGGGCg -3'
miRNA:   3'- -GCGCa---GCCgCagCGCgG-GCGGCCCGg -5'
23591 3' -66.5 NC_005261.1 + 78084 0.66 0.453821
Target:  5'- gGCGcUGGCcccCGCGCCgGCCcaGGCCc -3'
miRNA:   3'- gCGCaGCCGca-GCGCGGgCGGc-CCGG- -5'
23591 3' -66.5 NC_005261.1 + 118192 0.66 0.453821
Target:  5'- cCGCG--GGCccCGCGCCUGCCGcGCUg -3'
miRNA:   3'- -GCGCagCCGcaGCGCGGGCGGCcCGG- -5'
23591 3' -66.5 NC_005261.1 + 122327 0.66 0.453821
Target:  5'- gGCGgucaggUGGCGcUCGCagaGCUCGCCuggcGGCCg -3'
miRNA:   3'- gCGCa-----GCCGC-AGCG---CGGGCGGc---CCGG- -5'
23591 3' -66.5 NC_005261.1 + 130636 0.66 0.453821
Target:  5'- gCGCGgggCGcGCGU-GCGCUCGCCGacgcGCUg -3'
miRNA:   3'- -GCGCa--GC-CGCAgCGCGGGCGGCc---CGG- -5'
23591 3' -66.5 NC_005261.1 + 71071 0.66 0.453821
Target:  5'- cCGCG-CGGCGg-GCGgggCGuCCGGGCCc -3'
miRNA:   3'- -GCGCaGCCGCagCGCgg-GC-GGCCCGG- -5'
23591 3' -66.5 NC_005261.1 + 78143 0.66 0.453821
Target:  5'- cCGCccCGGCGccCGcCGCugCCGgCGGGCCa -3'
miRNA:   3'- -GCGcaGCCGCa-GC-GCG--GGCgGCCCGG- -5'
23591 3' -66.5 NC_005261.1 + 127636 0.66 0.453821
Target:  5'- aCGCGaCGGCGgcgGCGCCggggggCGCgCGGGUUc -3'
miRNA:   3'- -GCGCaGCCGCag-CGCGG------GCG-GCCCGG- -5'
23591 3' -66.5 NC_005261.1 + 92313 0.66 0.452972
Target:  5'- aGCGcCGcGCGgucCGCGCggcccauCCG-CGGGCCa -3'
miRNA:   3'- gCGCaGC-CGCa--GCGCG-------GGCgGCCCGG- -5'
23591 3' -66.5 NC_005261.1 + 51121 0.66 0.451276
Target:  5'- uCGCGgccgcugugaucauUCGGCG-CGaaaGCCC-CCGgGGCCc -3'
miRNA:   3'- -GCGC--------------AGCCGCaGCg--CGGGcGGC-CCGG- -5'
23591 3' -66.5 NC_005261.1 + 103055 0.66 0.448739
Target:  5'- aGCGccuguccCGGCacgGCGCCCagcaccgccgcgaagGCCGGGCCc -3'
miRNA:   3'- gCGCa------GCCGcagCGCGGG---------------CGGCCCGG- -5'
23591 3' -66.5 NC_005261.1 + 37841 0.66 0.44621
Target:  5'- aGCGccuucgccgccgacuUCGGCGUCcccgacgccuggcgGCGCgUGCUGGaGCCc -3'
miRNA:   3'- gCGC---------------AGCCGCAG--------------CGCGgGCGGCC-CGG- -5'
23591 3' -66.5 NC_005261.1 + 118121 0.66 0.445368
Target:  5'- gCGcCGcCGGC-UCGCG-CCGCUcGGCCg -3'
miRNA:   3'- -GC-GCaGCCGcAGCGCgGGCGGcCCGG- -5'
23591 3' -66.5 NC_005261.1 + 105285 0.66 0.445368
Target:  5'- aGCGcCGGCGagcccgggCGCGCgagCGCgGGGUCc -3'
miRNA:   3'- gCGCaGCCGCa-------GCGCGg--GCGgCCCGG- -5'
23591 3' -66.5 NC_005261.1 + 98162 0.66 0.445368
Target:  5'- cCGCGggCGGCGggUGUGUccuuggagCCGCCGGGg- -3'
miRNA:   3'- -GCGCa-GCCGCa-GCGCG--------GGCGGCCCgg -5'
23591 3' -66.5 NC_005261.1 + 76659 0.66 0.445368
Target:  5'- uGCGaggUCGGCGcCGUGCUgGCCcucGCCg -3'
miRNA:   3'- gCGC---AGCCGCaGCGCGGgCGGcc-CGG- -5'
23591 3' -66.5 NC_005261.1 + 76010 0.66 0.445368
Target:  5'- aCGCccUGGCGcCGCGCagcgCCGCgGGcGCCc -3'
miRNA:   3'- -GCGcaGCCGCaGCGCG----GGCGgCC-CGG- -5'
23591 3' -66.5 NC_005261.1 + 74078 0.66 0.445368
Target:  5'- aCGCGgccCGGCuugugCGCGaCCuCGCCcccccGGGCCc -3'
miRNA:   3'- -GCGCa--GCCGca---GCGC-GG-GCGG-----CCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.