miRNA display CGI


Results 81 - 100 of 613 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23591 3' -66.5 NC_005261.1 + 76010 0.66 0.445368
Target:  5'- aCGCccUGGCGcCGCGCagcgCCGCgGGcGCCc -3'
miRNA:   3'- -GCGcaGCCGCaGCGCG----GGCGgCC-CGG- -5'
23591 3' -66.5 NC_005261.1 + 76659 0.66 0.445368
Target:  5'- uGCGaggUCGGCGcCGUGCUgGCCcucGCCg -3'
miRNA:   3'- gCGC---AGCCGCaGCGCGGgCGGcc-CGG- -5'
23591 3' -66.5 NC_005261.1 + 98162 0.66 0.445368
Target:  5'- cCGCGggCGGCGggUGUGUccuuggagCCGCCGGGg- -3'
miRNA:   3'- -GCGCa-GCCGCa-GCGCG--------GGCGGCCCgg -5'
23591 3' -66.5 NC_005261.1 + 105285 0.66 0.445368
Target:  5'- aGCGcCGGCGagcccgggCGCGCgagCGCgGGGUCc -3'
miRNA:   3'- gCGCaGCCGCa-------GCGCGg--GCGgCCCGG- -5'
23591 3' -66.5 NC_005261.1 + 118121 0.66 0.445368
Target:  5'- gCGcCGcCGGC-UCGCG-CCGCUcGGCCg -3'
miRNA:   3'- -GC-GCaGCCGcAGCGCgGGCGGcCCGG- -5'
23591 3' -66.5 NC_005261.1 + 67055 0.66 0.445368
Target:  5'- cCGUGUaGGCGggcgCGCGCgggggcUCGCuCGGGCg -3'
miRNA:   3'- -GCGCAgCCGCa---GCGCG------GGCG-GCCCGg -5'
23591 3' -66.5 NC_005261.1 + 122786 0.66 0.444528
Target:  5'- gCGCGccagaCGGCGUccuuagagagccgCGCGCCCGCCa-GCa -3'
miRNA:   3'- -GCGCa----GCCGCA-------------GCGCGGGCGGccCGg -5'
23591 3' -66.5 NC_005261.1 + 101150 0.66 0.442849
Target:  5'- cCGCG-CGGCGgCGCG-CCGCCGcGaagagcucccacgcGCCg -3'
miRNA:   3'- -GCGCaGCCGCaGCGCgGGCGGC-C--------------CGG- -5'
23591 3' -66.5 NC_005261.1 + 10351 0.66 0.440339
Target:  5'- gGC-UCGGCGUuugucacggccgacaCGCGCgCGCUGcGCCg -3'
miRNA:   3'- gCGcAGCCGCA---------------GCGCGgGCGGCcCGG- -5'
23591 3' -66.5 NC_005261.1 + 3739 0.66 0.437004
Target:  5'- aCGCGcCGGCGgcgcacCGCGCCgccucuagCGCCucgcggcaGGCCg -3'
miRNA:   3'- -GCGCaGCCGCa-----GCGCGG--------GCGGc-------CCGG- -5'
23591 3' -66.5 NC_005261.1 + 31905 0.66 0.437004
Target:  5'- aCGCG-CGGC-UCuaccccgggGCGCcgCCGCUGGGCUc -3'
miRNA:   3'- -GCGCaGCCGcAG---------CGCG--GGCGGCCCGG- -5'
23591 3' -66.5 NC_005261.1 + 45084 0.66 0.437004
Target:  5'- aCGuCGUCGucCGUcaCGCGCCUgcgcguggaGCCGGGCa -3'
miRNA:   3'- -GC-GCAGCc-GCA--GCGCGGG---------CGGCCCGg -5'
23591 3' -66.5 NC_005261.1 + 71104 0.66 0.437004
Target:  5'- gGCGUacaCGGCGcgcagcUUGCGCCCG-CGcGCCa -3'
miRNA:   3'- gCGCA---GCCGC------AGCGCGGGCgGCcCGG- -5'
23591 3' -66.5 NC_005261.1 + 93915 0.66 0.437004
Target:  5'- gGCG-CGGCGcccgcgggcUUGCGCcguCCGCgGGcGCCg -3'
miRNA:   3'- gCGCaGCCGC---------AGCGCG---GGCGgCC-CGG- -5'
23591 3' -66.5 NC_005261.1 + 116165 0.66 0.437004
Target:  5'- gCGCGgucgCGGC--CGCGUccccgacgCCGCUGGGCg -3'
miRNA:   3'- -GCGCa---GCCGcaGCGCG--------GGCGGCCCGg -5'
23591 3' -66.5 NC_005261.1 + 117346 0.66 0.437004
Target:  5'- cCGCGcccaaGGCG-C-CGCCCGCaaGGCCg -3'
miRNA:   3'- -GCGCag---CCGCaGcGCGGGCGgcCCGG- -5'
23591 3' -66.5 NC_005261.1 + 123213 0.66 0.437004
Target:  5'- cCGCGUaaGCG-CG-GCCUGCCGccuagcGGCCg -3'
miRNA:   3'- -GCGCAgcCGCaGCgCGGGCGGC------CCGG- -5'
23591 3' -66.5 NC_005261.1 + 2216 0.66 0.437004
Target:  5'- cCGCGagcaGGUG-CGagaGCCCGCCGcgcaccggcGGCCa -3'
miRNA:   3'- -GCGCag--CCGCaGCg--CGGGCGGC---------CCGG- -5'
23591 3' -66.5 NC_005261.1 + 118420 0.66 0.437004
Target:  5'- cCGCGcUGGCuGUCGcCGCcgcggacgCCGCCGcGGCg -3'
miRNA:   3'- -GCGCaGCCG-CAGC-GCG--------GGCGGC-CCGg -5'
23591 3' -66.5 NC_005261.1 + 20854 0.66 0.437004
Target:  5'- aGCGU-GGCGgcucUUGCG-CCG-CGGGCCg -3'
miRNA:   3'- gCGCAgCCGC----AGCGCgGGCgGCCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.