miRNA display CGI


Results 1 - 20 of 613 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23591 3' -66.5 NC_005261.1 + 77 0.78 0.078123
Target:  5'- gCGCGggGGCGgggugcggggCGCGCCC-CCGGGCCc -3'
miRNA:   3'- -GCGCagCCGCa---------GCGCGGGcGGCCCGG- -5'
23591 3' -66.5 NC_005261.1 + 119 0.74 0.15356
Target:  5'- cCGCGcCGGCGcCGCcccugguGCUCGCgGGGCUg -3'
miRNA:   3'- -GCGCaGCCGCaGCG-------CGGGCGgCCCGG- -5'
23591 3' -66.5 NC_005261.1 + 334 0.72 0.185624
Target:  5'- gGCGgcugCGGCGgccCGCaGCCCGgCGcGGCCc -3'
miRNA:   3'- gCGCa---GCCGCa--GCG-CGGGCgGC-CCGG- -5'
23591 3' -66.5 NC_005261.1 + 636 0.66 0.479687
Target:  5'- uGUGgCGGCGgccgccagcgcCGCGUCC-CCGGcGCCg -3'
miRNA:   3'- gCGCaGCCGCa----------GCGCGGGcGGCC-CGG- -5'
23591 3' -66.5 NC_005261.1 + 1168 0.73 0.165192
Target:  5'- gCGCGcCGGCc-CGCGCCgCgGCCGgGGCCg -3'
miRNA:   3'- -GCGCaGCCGcaGCGCGG-G-CGGC-CCGG- -5'
23591 3' -66.5 NC_005261.1 + 1308 0.67 0.412466
Target:  5'- uCGCcggCGGCGgcaCGCGCuccgggacgCCGCCGcGCCg -3'
miRNA:   3'- -GCGca-GCCGCa--GCGCG---------GGCGGCcCGG- -5'
23591 3' -66.5 NC_005261.1 + 1410 0.72 0.215002
Target:  5'- cCGCGgcggCGGCGggggCgGCGCCCGCCuccagcaccagcggcGGcGCCu -3'
miRNA:   3'- -GCGCa---GCCGCa---G-CGCGGGCGG---------------CC-CGG- -5'
23591 3' -66.5 NC_005261.1 + 1478 0.69 0.297002
Target:  5'- aGCG-CGGC--CGCGCagaaggccaCCGCCGcGGCCg -3'
miRNA:   3'- gCGCaGCCGcaGCGCG---------GGCGGC-CCGG- -5'
23591 3' -66.5 NC_005261.1 + 1664 0.7 0.260666
Target:  5'- uGCG-CGGCcauGUCcuuGCGCCCGUCGaGCCg -3'
miRNA:   3'- gCGCaGCCG---CAG---CGCGGGCGGCcCGG- -5'
23591 3' -66.5 NC_005261.1 + 1718 0.7 0.272359
Target:  5'- uCGCG-CGGCGgcaCGgGCaCCGCggugcgCGGGCCc -3'
miRNA:   3'- -GCGCaGCCGCa--GCgCG-GGCG------GCCCGG- -5'
23591 3' -66.5 NC_005261.1 + 1834 0.78 0.080074
Target:  5'- aGCGgccUCGGCG-CGCGCgaaggCGCCGGGCCc -3'
miRNA:   3'- gCGC---AGCCGCaGCGCGg----GCGGCCCGG- -5'
23591 3' -66.5 NC_005261.1 + 1876 0.67 0.412466
Target:  5'- cCGCGaggccagcaCGGCG-CGCGCCagcgcgCGCCGcucaGGCCa -3'
miRNA:   3'- -GCGCa--------GCCGCaGCGCGG------GCGGC----CCGG- -5'
23591 3' -66.5 NC_005261.1 + 1938 0.7 0.265294
Target:  5'- cCGCGggcagcaccgCGGCGcgcagguacacgUGCGCCUgcccgacgGCCGGGCCa -3'
miRNA:   3'- -GCGCa---------GCCGCa-----------GCGCGGG--------CGGCCCGG- -5'
23591 3' -66.5 NC_005261.1 + 2006 0.74 0.137995
Target:  5'- uCGCGggguccaCGGCGUCGaucacgaucagccgcCGCCgCGCCGcGGCCa -3'
miRNA:   3'- -GCGCa------GCCGCAGC---------------GCGG-GCGGC-CCGG- -5'
23591 3' -66.5 NC_005261.1 + 2216 0.66 0.437004
Target:  5'- cCGCGagcaGGUG-CGagaGCCCGCCGcgcaccggcGGCCa -3'
miRNA:   3'- -GCGCag--CCGCaGCg--CGGGCGGC---------CCGG- -5'
23591 3' -66.5 NC_005261.1 + 2260 0.7 0.260666
Target:  5'- gGcCGcCGGCGcUCGUcCUCGCCGGGCg -3'
miRNA:   3'- gC-GCaGCCGC-AGCGcGGGCGGCCCGg -5'
23591 3' -66.5 NC_005261.1 + 2390 0.8 0.051176
Target:  5'- gCGCGcuggCGGCGagCGCGCCCG-CGGGCCc -3'
miRNA:   3'- -GCGCa---GCCGCa-GCGCGGGCgGCCCGG- -5'
23591 3' -66.5 NC_005261.1 + 2449 0.68 0.373522
Target:  5'- aGCGccUCGGgGUCgaagGCGagCGCCGGGCg -3'
miRNA:   3'- gCGC--AGCCgCAG----CGCggGCGGCCCGg -5'
23591 3' -66.5 NC_005261.1 + 2605 0.79 0.060958
Target:  5'- cCGcCGUCGGCGgCGgGgCCGCCGGGCg -3'
miRNA:   3'- -GC-GCAGCCGCaGCgCgGGCGGCCCGg -5'
23591 3' -66.5 NC_005261.1 + 2673 0.75 0.129986
Target:  5'- cCGCGcuggggaccCGGCGgCGCGCCggcuuuuggccggCGCCGGGCCc -3'
miRNA:   3'- -GCGCa--------GCCGCaGCGCGG-------------GCGGCCCGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.