miRNA display CGI


Results 41 - 60 of 613 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23591 3' -66.5 NC_005261.1 + 6335 0.73 0.164805
Target:  5'- cCGCGUacccccugcccacCGGCcUCGCGCCgGuCCGGcGCCg -3'
miRNA:   3'- -GCGCA-------------GCCGcAGCGCGGgC-GGCC-CGG- -5'
23591 3' -66.5 NC_005261.1 + 6432 0.73 0.177196
Target:  5'- uCGCGagGGCgGUCcggGgGCCgGCCGGGCUg -3'
miRNA:   3'- -GCGCagCCG-CAG---CgCGGgCGGCCCGG- -5'
23591 3' -66.5 NC_005261.1 + 8807 0.72 0.213055
Target:  5'- cCGcCGagGGCuugaaGggGCGCCCGCCGGGCa -3'
miRNA:   3'- -GC-GCagCCG-----CagCGCGGGCGGCCCGg -5'
23591 3' -66.5 NC_005261.1 + 9986 0.67 0.420551
Target:  5'- aCGCGccUCGGCGcggccacccgcUUGCcaCCCGaCCGGGCg -3'
miRNA:   3'- -GCGC--AGCCGC-----------AGCGc-GGGC-GGCCCGg -5'
23591 3' -66.5 NC_005261.1 + 10032 0.69 0.323342
Target:  5'- uCGCGUCGGgG--GCGCUCGCUcaccGGCCc -3'
miRNA:   3'- -GCGCAGCCgCagCGCGGGCGGc---CCGG- -5'
23591 3' -66.5 NC_005261.1 + 10206 0.67 0.381109
Target:  5'- cCGCGUgcucccagGGCc-CGCGCCUGCCcaggcGGGCCc -3'
miRNA:   3'- -GCGCAg-------CCGcaGCGCGGGCGG-----CCCGG- -5'
23591 3' -66.5 NC_005261.1 + 10351 0.66 0.440339
Target:  5'- gGC-UCGGCGUuugucacggccgacaCGCGCgCGCUGcGCCg -3'
miRNA:   3'- gCGcAGCCGCA---------------GCGCGgGCGGCcCGG- -5'
23591 3' -66.5 NC_005261.1 + 10540 0.78 0.072537
Target:  5'- uCGCuGUCGccccCGgCGCGCCUGCCGGGCCc -3'
miRNA:   3'- -GCG-CAGCc---GCaGCGCGGGCGGCCCGG- -5'
23591 3' -66.5 NC_005261.1 + 10903 0.71 0.217952
Target:  5'- gGCGgCGGCGgcaGCGCcgCCGCC-GGCCg -3'
miRNA:   3'- gCGCaGCCGCag-CGCG--GGCGGcCCGG- -5'
23591 3' -66.5 NC_005261.1 + 10965 0.69 0.309959
Target:  5'- aCGCGUgGGCcgccccgcccCGCGCCCGaCUGGcGCUg -3'
miRNA:   3'- -GCGCAgCCGca--------GCGCGGGC-GGCC-CGG- -5'
23591 3' -66.5 NC_005261.1 + 11869 0.75 0.116644
Target:  5'- aGCGUCagcugcggGGCGagcccgcccgcacgCGCGCCCGCCgcGGGCCc -3'
miRNA:   3'- gCGCAG--------CCGCa-------------GCGCGGGCGG--CCCGG- -5'
23591 3' -66.5 NC_005261.1 + 11928 0.68 0.337151
Target:  5'- gGCGgcugCGGCGgccCGCGCCgCGgCGGcucGCCc -3'
miRNA:   3'- gCGCa---GCCGCa--GCGCGG-GCgGCC---CGG- -5'
23591 3' -66.5 NC_005261.1 + 12071 0.67 0.420551
Target:  5'- uGCGgcagCGGCGUC-CGC--GCCGGGgCg -3'
miRNA:   3'- gCGCa---GCCGCAGcGCGggCGGCCCgG- -5'
23591 3' -66.5 NC_005261.1 + 12105 0.69 0.308644
Target:  5'- gGCG-CGGCGccagcUCuagcgccaggaugGCGCCCGCCGccgcggcGGCCg -3'
miRNA:   3'- gCGCaGCCGC-----AG-------------CGCGGGCGGC-------CCGG- -5'
23591 3' -66.5 NC_005261.1 + 12315 0.71 0.233224
Target:  5'- gCGCGUagcCGGCGggcgCGCGCuuGgCCGGcgcgGCCg -3'
miRNA:   3'- -GCGCA---GCCGCa---GCGCGggC-GGCC----CGG- -5'
23591 3' -66.5 NC_005261.1 + 12431 0.72 0.203544
Target:  5'- gGCGgagggcuugCGGCGUCG-GCCgCGUCGGcGCCc -3'
miRNA:   3'- gCGCa--------GCCGCAGCgCGG-GCGGCC-CGG- -5'
23591 3' -66.5 NC_005261.1 + 12552 0.7 0.249385
Target:  5'- aCGCGggGGCccCGCGCCgggcaaCGCgGGGCCg -3'
miRNA:   3'- -GCGCagCCGcaGCGCGG------GCGgCCCGG- -5'
23591 3' -66.5 NC_005261.1 + 12715 0.71 0.238511
Target:  5'- aGCGgcUCgGGCGcgCGgGCCCGCC-GGCCc -3'
miRNA:   3'- gCGC--AG-CCGCa-GCgCGGGCGGcCCGG- -5'
23591 3' -66.5 NC_005261.1 + 12958 0.7 0.283855
Target:  5'- cCGCG-CGGCG-CGCGCaCCccagacaGCgaGGGCCg -3'
miRNA:   3'- -GCGCaGCCGCaGCGCG-GG-------CGg-CCCGG- -5'
23591 3' -66.5 NC_005261.1 + 13047 0.74 0.150325
Target:  5'- gCGCGgggCcGCG-CGCGCCCcuGCCGGGCg -3'
miRNA:   3'- -GCGCa--GcCGCaGCGCGGG--CGGCCCGg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.