miRNA display CGI


Results 61 - 80 of 613 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23591 3' -66.5 NC_005261.1 + 13112 0.68 0.366038
Target:  5'- -uCGggGGCGUCgGCGgCCGCgGGGCg -3'
miRNA:   3'- gcGCagCCGCAG-CGCgGGCGgCCCGg -5'
23591 3' -66.5 NC_005261.1 + 13419 0.67 0.420551
Target:  5'- aCGCGaaGGCGcacCGCGCgUCGaCCGGGUg -3'
miRNA:   3'- -GCGCagCCGCa--GCGCG-GGC-GGCCCGg -5'
23591 3' -66.5 NC_005261.1 + 13810 0.67 0.396588
Target:  5'- aGCGUCGGCcggcUCGa-CCCGCagcgucaGGGUCg -3'
miRNA:   3'- gCGCAGCCGc---AGCgcGGGCGg------CCCGG- -5'
23591 3' -66.5 NC_005261.1 + 13856 0.66 0.479687
Target:  5'- uCGuCGcCGGCGUCGcCGgCgGCCcGGUCg -3'
miRNA:   3'- -GC-GCaGCCGCAGC-GCgGgCGGcCCGG- -5'
23591 3' -66.5 NC_005261.1 + 14083 0.67 0.412466
Target:  5'- -aCGUCGGCGaagcacUCGCGgUCGUCGaGGCa -3'
miRNA:   3'- gcGCAGCCGC------AGCGCgGGCGGC-CCGg -5'
23591 3' -66.5 NC_005261.1 + 14164 0.68 0.366038
Target:  5'- cCGCGaaCGGCG-CGCGUCUcgggGCgCGGGUCa -3'
miRNA:   3'- -GCGCa-GCCGCaGCGCGGG----CG-GCCCGG- -5'
23591 3' -66.5 NC_005261.1 + 14224 0.76 0.104843
Target:  5'- aCGCGcgCGGUGaagacCGCGCCgGCCGgGGCCu -3'
miRNA:   3'- -GCGCa-GCCGCa----GCGCGGgCGGC-CCGG- -5'
23591 3' -66.5 NC_005261.1 + 14528 0.66 0.453821
Target:  5'- aGCc-CGGCGguggCGCGgCCGCCcGGCg -3'
miRNA:   3'- gCGcaGCCGCa---GCGCgGGCGGcCCGg -5'
23591 3' -66.5 NC_005261.1 + 14751 0.75 0.130298
Target:  5'- gGCGaUCGGCGcCGCGCCgCGaCagggGGGCCg -3'
miRNA:   3'- gCGC-AGCCGCaGCGCGG-GC-Gg---CCCGG- -5'
23591 3' -66.5 NC_005261.1 + 14982 0.69 0.309959
Target:  5'- uGCG-CGGC--CGCGCCgGCCGcGCCc -3'
miRNA:   3'- gCGCaGCCGcaGCGCGGgCGGCcCGG- -5'
23591 3' -66.5 NC_005261.1 + 15171 0.73 0.173111
Target:  5'- gGCGUagCGGCGgcgGCGCCCGCgGGaaacGCCg -3'
miRNA:   3'- gCGCA--GCCGCag-CGCGGGCGgCC----CGG- -5'
23591 3' -66.5 NC_005261.1 + 15226 0.66 0.470983
Target:  5'- uCGCcgaGcCGGCGUUGaggcccCGCUCGCaguGGGCCg -3'
miRNA:   3'- -GCG---CaGCCGCAGC------GCGGGCGg--CCCGG- -5'
23591 3' -66.5 NC_005261.1 + 15290 0.67 0.427909
Target:  5'- gCGCG-CGGU--CGCgGCCUccgggucgucggaGCCGGGCCc -3'
miRNA:   3'- -GCGCaGCCGcaGCG-CGGG-------------CGGCCCGG- -5'
23591 3' -66.5 NC_005261.1 + 15535 0.68 0.351384
Target:  5'- aGCGgaaGGCGUCGUucGCgaCGCgCGGGCa -3'
miRNA:   3'- gCGCag-CCGCAGCG--CGg-GCG-GCCCGg -5'
23591 3' -66.5 NC_005261.1 + 15696 0.72 0.185624
Target:  5'- aGCG-CGaGCGUUGCGUCgGCUGGGUg -3'
miRNA:   3'- gCGCaGC-CGCAGCGCGGgCGGCCCGg -5'
23591 3' -66.5 NC_005261.1 + 16241 0.7 0.249385
Target:  5'- gGCgGUCGaCGUcCGCGCcggggCCGCCGgGGCCg -3'
miRNA:   3'- gCG-CAGCcGCA-GCGCG-----GGCGGC-CCGG- -5'
23591 3' -66.5 NC_005261.1 + 16289 0.69 0.296366
Target:  5'- cCGgGggGGCGccgUCGgGCCCagcggcgGCCGGGCCc -3'
miRNA:   3'- -GCgCagCCGC---AGCgCGGG-------CGGCCCGG- -5'
23591 3' -66.5 NC_005261.1 + 17194 0.7 0.28447
Target:  5'- cCGCGgCGGCGagcagCGCGCCCaGCaCGGacagcagcGCCa -3'
miRNA:   3'- -GCGCaGCCGCa----GCGCGGG-CG-GCC--------CGG- -5'
23591 3' -66.5 NC_005261.1 + 17311 0.67 0.396588
Target:  5'- cCG-GcCGGgGUCGCgGCCCGgCCcGGCCc -3'
miRNA:   3'- -GCgCaGCCgCAGCG-CGGGC-GGcCCGG- -5'
23591 3' -66.5 NC_005261.1 + 17546 0.7 0.266461
Target:  5'- uGgG-CGGCG-CGgGCCCGCCGuucggcgguGGCCu -3'
miRNA:   3'- gCgCaGCCGCaGCgCGGGCGGC---------CCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.