miRNA display CGI


Results 81 - 100 of 613 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23591 3' -66.5 NC_005261.1 + 17824 0.66 0.470117
Target:  5'- gGCGUUGcacuccaGCGagGCGuUCCGCaGGGCCu -3'
miRNA:   3'- gCGCAGC-------CGCagCGC-GGGCGgCCCGG- -5'
23591 3' -66.5 NC_005261.1 + 17908 0.68 0.369019
Target:  5'- gGCGaCGGCGccgauuagcagcgagUCGgGCCCGCUGGcGUUc -3'
miRNA:   3'- gCGCaGCCGC---------------AGCgCGGGCGGCC-CGG- -5'
23591 3' -66.5 NC_005261.1 + 18524 0.78 0.076216
Target:  5'- cCGCGUcaaugacggCGGCGUccCGCgGCCCGCUGGGCa -3'
miRNA:   3'- -GCGCA---------GCCGCA--GCG-CGGGCGGCCCGg -5'
23591 3' -66.5 NC_005261.1 + 18609 0.68 0.344214
Target:  5'- gGUGUC--CGUCGCGCgCGCCGaaauccgcgaGGCCa -3'
miRNA:   3'- gCGCAGccGCAGCGCGgGCGGC----------CCGG- -5'
23591 3' -66.5 NC_005261.1 + 19843 0.71 0.226498
Target:  5'- gCGCG-CGGCGUccucggcuuccucgCGCGagacCCCGCCggcGGGCCc -3'
miRNA:   3'- -GCGCaGCCGCA--------------GCGC----GGGCGG---CCCGG- -5'
23591 3' -66.5 NC_005261.1 + 20111 0.67 0.404478
Target:  5'- cCGCGgcaaGGCGcgCGgGCCCGCaGcGGCUc -3'
miRNA:   3'- -GCGCag--CCGCa-GCgCGGGCGgC-CCGG- -5'
23591 3' -66.5 NC_005261.1 + 20208 0.69 0.323342
Target:  5'- cCGCcaaaGGCccCGCGCCCGCUGccuGGCCa -3'
miRNA:   3'- -GCGcag-CCGcaGCGCGGGCGGC---CCGG- -5'
23591 3' -66.5 NC_005261.1 + 20251 0.66 0.453821
Target:  5'- gCGCGcUCcaugGGCGcCGagaaCCGCCGGGUCg -3'
miRNA:   3'- -GCGC-AG----CCGCaGCgcg-GGCGGCCCGG- -5'
23591 3' -66.5 NC_005261.1 + 20854 0.66 0.437004
Target:  5'- aGCGU-GGCGgcucUUGCG-CCG-CGGGCCg -3'
miRNA:   3'- gCGCAgCCGC----AGCGCgGGCgGCCCGG- -5'
23591 3' -66.5 NC_005261.1 + 21406 0.71 0.217952
Target:  5'- uGCGUUcccGCGcCGCGCCgGCCGGuGCa -3'
miRNA:   3'- gCGCAGc--CGCaGCGCGGgCGGCC-CGg -5'
23591 3' -66.5 NC_005261.1 + 21745 0.68 0.366038
Target:  5'- aCGCGgcugCuGCGccuggaGCGCgCGCCGGGCg -3'
miRNA:   3'- -GCGCa---GcCGCag----CGCGgGCGGCCCGg -5'
23591 3' -66.5 NC_005261.1 + 21784 0.73 0.173111
Target:  5'- cCGCGgcgCGGgcCGcCGCagccGCCgGCCGGGCCg -3'
miRNA:   3'- -GCGCa--GCC--GCaGCG----CGGgCGGCCCGG- -5'
23591 3' -66.5 NC_005261.1 + 21820 0.66 0.479687
Target:  5'- gGCccgCGGCGggCGCGCgUGCgggCGGGCUc -3'
miRNA:   3'- gCGca-GCCGCa-GCGCGgGCG---GCCCGG- -5'
23591 3' -66.5 NC_005261.1 + 21868 0.77 0.086213
Target:  5'- uCGCGcUC-GCGaacgCGCGCCCGCgGGGCCc -3'
miRNA:   3'- -GCGC-AGcCGCa---GCGCGGGCGgCCCGG- -5'
23591 3' -66.5 NC_005261.1 + 22653 0.68 0.359392
Target:  5'- aCGCGcuggCGGCGccugggCgGCGCCCGagugccgccgggggaCGGGCCc -3'
miRNA:   3'- -GCGCa---GCCGCa-----G-CGCGGGCg--------------GCCCGG- -5'
23591 3' -66.5 NC_005261.1 + 22753 0.69 0.323342
Target:  5'- gGCGgCGGCGgcccaCGCGUCUGggggCGGGCCc -3'
miRNA:   3'- gCGCaGCCGCa----GCGCGGGCg---GCCCGG- -5'
23591 3' -66.5 NC_005261.1 + 22803 0.72 0.211604
Target:  5'- uCGCGgccggCGGCGgCGCuGCCgccgccgccguuggCGCCGGGCUc -3'
miRNA:   3'- -GCGCa----GCCGCaGCG-CGG--------------GCGGCCCGG- -5'
23591 3' -66.5 NC_005261.1 + 23176 0.71 0.243898
Target:  5'- gCGCGcCGGgGgcgacagcgaGCGCgCCGCgGGGCCc -3'
miRNA:   3'- -GCGCaGCCgCag--------CGCG-GGCGgCCCGG- -5'
23591 3' -66.5 NC_005261.1 + 23340 0.68 0.344214
Target:  5'- gCGCG-CGGCGcagcgCGCGCgUGUC-GGCCg -3'
miRNA:   3'- -GCGCaGCCGCa----GCGCGgGCGGcCCGG- -5'
23591 3' -66.5 NC_005261.1 + 23474 0.76 0.104843
Target:  5'- cCGCGgCGGCGagugcgCGgGCCCGCCuGGGCa -3'
miRNA:   3'- -GCGCaGCCGCa-----GCgCGGGCGG-CCCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.