miRNA display CGI


Results 101 - 120 of 613 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23591 3' -66.5 NC_005261.1 + 23596 0.67 0.396588
Target:  5'- gGCGgugguggUGGCuGUCGcCGCCgcUGCCGGGgCg -3'
miRNA:   3'- gCGCa------GCCG-CAGC-GCGG--GCGGCCCgG- -5'
23591 3' -66.5 NC_005261.1 + 23774 0.67 0.420551
Target:  5'- gGCGggcCGGCuagggUGgGCUCGCCGGGgCa -3'
miRNA:   3'- gCGCa--GCCGca---GCgCGGGCGGCCCgG- -5'
23591 3' -66.5 NC_005261.1 + 23831 0.67 0.420551
Target:  5'- gGCGggcCGGCuagggUGgGCUCGCCGGGgCa -3'
miRNA:   3'- gCGCa--GCCGca---GCgCGGGCGGCCCgG- -5'
23591 3' -66.5 NC_005261.1 + 23888 0.68 0.373522
Target:  5'- gGCGggcCGGCuagggUGgGCUCGCUGGGCUg -3'
miRNA:   3'- gCGCa--GCCGca---GCgCGGGCGGCCCGG- -5'
23591 3' -66.5 NC_005261.1 + 24041 0.77 0.086213
Target:  5'- uCGgGUgGGCGUCcuuggguggGCGCCCGCCcgaguGGGCCc -3'
miRNA:   3'- -GCgCAgCCGCAG---------CGCGGGCGG-----CCCGG- -5'
23591 3' -66.5 NC_005261.1 + 24368 0.69 0.330193
Target:  5'- -uCGUCGGCGgUGCuCCCGgUGGGCUc -3'
miRNA:   3'- gcGCAGCCGCaGCGcGGGCgGCCCGG- -5'
23591 3' -66.5 NC_005261.1 + 28188 0.66 0.470983
Target:  5'- gCGCGccgaagcCGGCGgccUCGcCGCCgcUGCCGcGGCCc -3'
miRNA:   3'- -GCGCa------GCCGC---AGC-GCGG--GCGGC-CCGG- -5'
23591 3' -66.5 NC_005261.1 + 28262 0.66 0.453821
Target:  5'- uGC-UCGGgGggGCGCuguugccgCCGCCGcGGCCg -3'
miRNA:   3'- gCGcAGCCgCagCGCG--------GGCGGC-CCGG- -5'
23591 3' -66.5 NC_005261.1 + 28557 0.72 0.194403
Target:  5'- uGC-UCGaCG-CG-GCCCGCCGGGCCg -3'
miRNA:   3'- gCGcAGCcGCaGCgCGGGCGGCCCGG- -5'
23591 3' -66.5 NC_005261.1 + 28834 0.7 0.272359
Target:  5'- gGCGgccgCGGCuGagGCGgCCGUCGuGGCCg -3'
miRNA:   3'- gCGCa---GCCG-CagCGCgGGCGGC-CCGG- -5'
23591 3' -66.5 NC_005261.1 + 29131 0.69 0.330193
Target:  5'- gGCGcCGGgGggCGC-CCCGCCGGacccGCCc -3'
miRNA:   3'- gCGCaGCCgCa-GCGcGGGCGGCC----CGG- -5'
23591 3' -66.5 NC_005261.1 + 29182 0.67 0.381109
Target:  5'- gGCc-CGGCGcCcucgccgcgGCGCCCGCgCGGGCg -3'
miRNA:   3'- gCGcaGCCGCaG---------CGCGGGCG-GCCCGg -5'
23591 3' -66.5 NC_005261.1 + 29240 0.68 0.373522
Target:  5'- aCGcCG-CGGCGcCGCGCgacgggCCGCCgccgcuggaGGGCCc -3'
miRNA:   3'- -GC-GCaGCCGCaGCGCG------GGCGG---------CCCGG- -5'
23591 3' -66.5 NC_005261.1 + 29343 0.67 0.388024
Target:  5'- gCGCuUCGGCGgCGCGggcgacaCUCGCgaGGGCCu -3'
miRNA:   3'- -GCGcAGCCGCaGCGC-------GGGCGg-CCCGG- -5'
23591 3' -66.5 NC_005261.1 + 29397 0.7 0.254974
Target:  5'- cCGCGa-GGCGgccgCGCGCuacgcggcggCCGCgGGGCCc -3'
miRNA:   3'- -GCGCagCCGCa---GCGCG----------GGCGgCCCGG- -5'
23591 3' -66.5 NC_005261.1 + 29569 0.67 0.381109
Target:  5'- gCGCGccugcugcagCGGCG-CGUGCagggCUGCCGgGGCCa -3'
miRNA:   3'- -GCGCa---------GCCGCaGCGCG----GGCGGC-CCGG- -5'
23591 3' -66.5 NC_005261.1 + 29629 0.67 0.412466
Target:  5'- aGCGUgaCGGCGcCGCuG-CCGCCGGucggggacGCCa -3'
miRNA:   3'- gCGCA--GCCGCaGCG-CgGGCGGCC--------CGG- -5'
23591 3' -66.5 NC_005261.1 + 29768 0.73 0.174735
Target:  5'- uGCGgCGcGCGUaCGCGCCCauggccuacccggagGCCGGcGCCg -3'
miRNA:   3'- gCGCaGC-CGCA-GCGCGGG---------------CGGCC-CGG- -5'
23591 3' -66.5 NC_005261.1 + 29821 0.69 0.316597
Target:  5'- gGCGcCcGCGcCGCGCUCGCCGaGCUg -3'
miRNA:   3'- gCGCaGcCGCaGCGCGGGCGGCcCGG- -5'
23591 3' -66.5 NC_005261.1 + 29871 0.73 0.177196
Target:  5'- gGCGcCGGCGcCGCuGCCgccagCGcCCGGGCCc -3'
miRNA:   3'- gCGCaGCCGCaGCG-CGG-----GC-GGCCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.