miRNA display CGI


Results 1 - 20 of 613 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23591 3' -66.5 NC_005261.1 + 138005 0.72 0.185624
Target:  5'- gGCGgcugCGGCGgccCGCaGCCCGgCGcGGCCc -3'
miRNA:   3'- gCGCa---GCCGCa--GCG-CGGGCgGC-CCGG- -5'
23591 3' -66.5 NC_005261.1 + 137802 0.74 0.15356
Target:  5'- cCGCGcCGGCGcCGCcccugguGCUCGCgGGGCUg -3'
miRNA:   3'- -GCGCaGCCGCaGCG-------CGGGCGgCCCGG- -5'
23591 3' -66.5 NC_005261.1 + 137760 0.78 0.078123
Target:  5'- gCGCGggGGCGgggugcggggCGCGCCC-CCGGGCCc -3'
miRNA:   3'- -GCGCagCCGCa---------GCGCGGGcGGCCCGG- -5'
23591 3' -66.5 NC_005261.1 + 136608 0.72 0.185624
Target:  5'- gCGUGgagCGGCG-CGCGCgCGCCgaGGGCg -3'
miRNA:   3'- -GCGCa--GCCGCaGCGCGgGCGG--CCCGg -5'
23591 3' -66.5 NC_005261.1 + 135049 0.67 0.395805
Target:  5'- aCGCcugCGGCGgcaGCgGCCCGCCgcuuuccggcggcGGGCUc -3'
miRNA:   3'- -GCGca-GCCGCag-CG-CGGGCGG-------------CCCGG- -5'
23591 3' -66.5 NC_005261.1 + 135001 0.7 0.272359
Target:  5'- gGCGccccUGGCGcggCGgGCCCGCaCGcGGCCg -3'
miRNA:   3'- gCGCa---GCCGCa--GCgCGGGCG-GC-CCGG- -5'
23591 3' -66.5 NC_005261.1 + 134856 0.68 0.373522
Target:  5'- aCGgGgacaaGGCGccCGCGCCCcCgCGGGCCc -3'
miRNA:   3'- -GCgCag---CCGCa-GCGCGGGcG-GCCCGG- -5'
23591 3' -66.5 NC_005261.1 + 134746 0.66 0.488469
Target:  5'- gGCGaCGGCaccCGCGaCCCGCgGcGGCa -3'
miRNA:   3'- gCGCaGCCGca-GCGC-GGGCGgC-CCGg -5'
23591 3' -66.5 NC_005261.1 + 134705 0.67 0.395805
Target:  5'- uGCGaCcGCGgCGCGCCCagacccgGCCGGGaCCc -3'
miRNA:   3'- gCGCaGcCGCaGCGCGGG-------CGGCCC-GG- -5'
23591 3' -66.5 NC_005261.1 + 134562 0.67 0.412466
Target:  5'- uGCugggCGGCGcCGCGgCUGCgcagggCGGGCCu -3'
miRNA:   3'- gCGca--GCCGCaGCGCgGGCG------GCCCGG- -5'
23591 3' -66.5 NC_005261.1 + 134233 0.78 0.074355
Target:  5'- aGCGUCGGCGUgGCGCaCgCGCCcugcgcGGCCg -3'
miRNA:   3'- gCGCAGCCGCAgCGCG-G-GCGGc-----CCGG- -5'
23591 3' -66.5 NC_005261.1 + 134200 0.67 0.420551
Target:  5'- gCGCGgcUCGGCG-CGCgGgUCGCgGcGGCCg -3'
miRNA:   3'- -GCGC--AGCCGCaGCG-CgGGCGgC-CCGG- -5'
23591 3' -66.5 NC_005261.1 + 134101 0.74 0.136684
Target:  5'- gCGCGcCGGCG-CGCGCUCGCC--GCCg -3'
miRNA:   3'- -GCGCaGCCGCaGCGCGGGCGGccCGG- -5'
23591 3' -66.5 NC_005261.1 + 133832 0.72 0.198928
Target:  5'- uGCG-CGGcCG-CGUGCgCGCCGuGGCCg -3'
miRNA:   3'- gCGCaGCC-GCaGCGCGgGCGGC-CCGG- -5'
23591 3' -66.5 NC_005261.1 + 133653 0.66 0.479687
Target:  5'- uGCG-CGaGCGcugCGUGCUCGCCuccGGcGCCa -3'
miRNA:   3'- gCGCaGC-CGCa--GCGCGGGCGG---CC-CGG- -5'
23591 3' -66.5 NC_005261.1 + 133617 0.72 0.213055
Target:  5'- uCGCGcUGGCGcugugggcCGCGCUCGCCGcGCCg -3'
miRNA:   3'- -GCGCaGCCGCa-------GCGCGGGCGGCcCGG- -5'
23591 3' -66.5 NC_005261.1 + 133269 0.69 0.316597
Target:  5'- gCGCGaguaccagGGCGcCgGCGCCCGCCucguGGCCg -3'
miRNA:   3'- -GCGCag------CCGCaG-CGCGGGCGGc---CCGG- -5'
23591 3' -66.5 NC_005261.1 + 133160 0.71 0.222945
Target:  5'- cCGcCGUCGGCGUCGcCGCcgacaaCCGC-GGcGCCg -3'
miRNA:   3'- -GC-GCAGCCGCAGC-GCG------GGCGgCC-CGG- -5'
23591 3' -66.5 NC_005261.1 + 132697 0.67 0.412466
Target:  5'- cCGCGU-GGC--CGUGCCCGucCCGGcGCCc -3'
miRNA:   3'- -GCGCAgCCGcaGCGCGGGC--GGCC-CGG- -5'
23591 3' -66.5 NC_005261.1 + 132580 0.67 0.404478
Target:  5'- aGaCGUCGGCGcgccCGCGgaCGCCcGGCCc -3'
miRNA:   3'- gC-GCAGCCGCa---GCGCggGCGGcCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.