miRNA display CGI


Results 21 - 40 of 613 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23591 3' -66.5 NC_005261.1 + 132061 0.69 0.309959
Target:  5'- gGUGgCGGCcgagGUCGCGgCCGCCGucGCCg -3'
miRNA:   3'- gCGCaGCCG----CAGCGCgGGCGGCc-CGG- -5'
23591 3' -66.5 NC_005261.1 + 131935 0.71 0.222945
Target:  5'- gCGCGggaccgCGGUGccCGCGCCCGucuaCCGGGUg -3'
miRNA:   3'- -GCGCa-----GCCGCa-GCGCGGGC----GGCCCGg -5'
23591 3' -66.5 NC_005261.1 + 131896 0.72 0.198928
Target:  5'- aCGCGaCGGCG-CGCaCCCGCuggaCGGGCUu -3'
miRNA:   3'- -GCGCaGCCGCaGCGcGGGCG----GCCCGG- -5'
23591 3' -66.5 NC_005261.1 + 131768 0.8 0.059457
Target:  5'- gGCG-CGGCGg-GCGCgCCGCUGGGCCc -3'
miRNA:   3'- gCGCaGCCGCagCGCG-GGCGGCCCGG- -5'
23591 3' -66.5 NC_005261.1 + 131602 0.68 0.363814
Target:  5'- aCGCGcgCGcGCGcacguacgcgcgccUgGCGCCCGCCgcgaggaccgacGGGCCc -3'
miRNA:   3'- -GCGCa-GC-CGC--------------AgCGCGGGCGG------------CCCGG- -5'
23591 3' -66.5 NC_005261.1 + 131433 0.7 0.266461
Target:  5'- gGCGcCGGCGccccccUUGCGCCgCGCCucgcGGGCg -3'
miRNA:   3'- gCGCaGCCGC------AGCGCGG-GCGG----CCCGg -5'
23591 3' -66.5 NC_005261.1 + 131195 0.71 0.233224
Target:  5'- cCGCGgcgCGGuCGccgccggCGCGCCCGCguaCGuGGCCg -3'
miRNA:   3'- -GCGCa--GCC-GCa------GCGCGGGCG---GC-CCGG- -5'
23591 3' -66.5 NC_005261.1 + 130840 0.72 0.203078
Target:  5'- uGCGcucaaccUUGcGCG-CGCGCCCgGCCGGGCg -3'
miRNA:   3'- gCGC-------AGC-CGCaGCGCGGG-CGGCCCGg -5'
23591 3' -66.5 NC_005261.1 + 130636 0.66 0.453821
Target:  5'- gCGCGgggCGcGCGU-GCGCUCGCCGacgcGCUg -3'
miRNA:   3'- -GCGCa--GC-CGCAgCGCGGGCGGCc---CGG- -5'
23591 3' -66.5 NC_005261.1 + 130540 0.69 0.323342
Target:  5'- cCGCucGUC-GCGUUuuaucugcuggGCgGCCCGCCGGGCg -3'
miRNA:   3'- -GCG--CAGcCGCAG-----------CG-CGGGCGGCCCGg -5'
23591 3' -66.5 NC_005261.1 + 130220 0.68 0.344214
Target:  5'- gGCGgaaGaGCGUCG-GCCCGCUcaGGcGCCg -3'
miRNA:   3'- gCGCag-C-CGCAGCgCGGGCGG--CC-CGG- -5'
23591 3' -66.5 NC_005261.1 + 129969 0.69 0.309959
Target:  5'- gGCGgccaGGCaaguGUCGCGCaugCGCUGGGCg -3'
miRNA:   3'- gCGCag--CCG----CAGCGCGg--GCGGCCCGg -5'
23591 3' -66.5 NC_005261.1 + 129671 0.7 0.266461
Target:  5'- gGCGggaccgggGGCGUCGCGaCUCggGCCGgGGCCg -3'
miRNA:   3'- gCGCag------CCGCAGCGC-GGG--CGGC-CCGG- -5'
23591 3' -66.5 NC_005261.1 + 129377 0.72 0.198928
Target:  5'- uCGCG-CGGCuUCGgGUCCaCCGGGCUg -3'
miRNA:   3'- -GCGCaGCCGcAGCgCGGGcGGCCCGG- -5'
23591 3' -66.5 NC_005261.1 + 129300 0.68 0.337151
Target:  5'- cCGCcccCGGCGcccCGCGCCugCGCUGGcGCCg -3'
miRNA:   3'- -GCGca-GCCGCa--GCGCGG--GCGGCC-CGG- -5'
23591 3' -66.5 NC_005261.1 + 128103 0.66 0.437004
Target:  5'- gGCGagCGGCG-CgGCGCgggGUCGGGCCg -3'
miRNA:   3'- gCGCa-GCCGCaG-CGCGgg-CGGCCCGG- -5'
23591 3' -66.5 NC_005261.1 + 127878 0.73 0.165192
Target:  5'- aGCGggagucGCGcCgGCGCCCGUCGGGCCc -3'
miRNA:   3'- gCGCagc---CGCaG-CGCGGGCGGCCCGG- -5'
23591 3' -66.5 NC_005261.1 + 127809 0.71 0.233224
Target:  5'- cCGCGgCGGCGggccgcUCGCGCUCGC--GGCCg -3'
miRNA:   3'- -GCGCaGCCGC------AGCGCGGGCGgcCCGG- -5'
23591 3' -66.5 NC_005261.1 + 127736 0.67 0.404478
Target:  5'- aGCGggagcuuggCGGCGggagCGgGCCgCGgCGGGCg -3'
miRNA:   3'- gCGCa--------GCCGCa---GCgCGG-GCgGCCCGg -5'
23591 3' -66.5 NC_005261.1 + 127674 0.66 0.462361
Target:  5'- gGCGggacggCGGCGgcCGCuGcCCCGgCGGcGCCg -3'
miRNA:   3'- gCGCa-----GCCGCa-GCG-C-GGGCgGCC-CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.