miRNA display CGI


Results 41 - 60 of 613 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23591 3' -66.5 NC_005261.1 + 127636 0.66 0.453821
Target:  5'- aCGCGaCGGCGgcgGCGCCggggggCGCgCGGGUUc -3'
miRNA:   3'- -GCGCaGCCGCag-CGCGG------GCG-GCCCGG- -5'
23591 3' -66.5 NC_005261.1 + 127564 0.71 0.238511
Target:  5'- aCGCGU--GCGUCG-GCCCGCaccaGGGCg -3'
miRNA:   3'- -GCGCAgcCGCAGCgCGGGCGg---CCCGg -5'
23591 3' -66.5 NC_005261.1 + 127491 0.67 0.420551
Target:  5'- aCGC--UGGCGgc-UGCCUGCCGGGCg -3'
miRNA:   3'- -GCGcaGCCGCagcGCGGGCGGCCCGg -5'
23591 3' -66.5 NC_005261.1 + 126519 0.74 0.143356
Target:  5'- uGCcUgGGCGccCGCGCCCGCCGcGCCu -3'
miRNA:   3'- gCGcAgCCGCa-GCGCGGGCGGCcCGG- -5'
23591 3' -66.5 NC_005261.1 + 126057 0.68 0.358659
Target:  5'- cCGCucCGGCGccaGcCGCCCGCC-GGCCu -3'
miRNA:   3'- -GCGcaGCCGCag-C-GCGGGCGGcCCGG- -5'
23591 3' -66.5 NC_005261.1 + 125323 0.72 0.185194
Target:  5'- cCGCGgccUCGGCGUCcgcagcgcgcaggGCGUccagcaggcuCCGCCGGGCa -3'
miRNA:   3'- -GCGC---AGCCGCAG-------------CGCG----------GGCGGCCCGg -5'
23591 3' -66.5 NC_005261.1 + 125132 0.67 0.396588
Target:  5'- uGCGUCuGUGUCcauaGCaUCGCCGGcGCCg -3'
miRNA:   3'- gCGCAGcCGCAGcg--CG-GGCGGCC-CGG- -5'
23591 3' -66.5 NC_005261.1 + 124851 0.68 0.344214
Target:  5'- uCGCGcaggucugCGGCGUCGuCGCCuuCGUCGucuGGCCc -3'
miRNA:   3'- -GCGCa-------GCCGCAGC-GCGG--GCGGC---CCGG- -5'
23591 3' -66.5 NC_005261.1 + 124619 0.67 0.396588
Target:  5'- gCGCGUccagCGGCaUCuGCGCgaagaaggCGCUGGGCCg -3'
miRNA:   3'- -GCGCA----GCCGcAG-CGCGg-------GCGGCCCGG- -5'
23591 3' -66.5 NC_005261.1 + 124260 0.7 0.266461
Target:  5'- cCGCG-CGGCG-C-CGCCCGCgCGccccGGCCg -3'
miRNA:   3'- -GCGCaGCCGCaGcGCGGGCG-GC----CCGG- -5'
23591 3' -66.5 NC_005261.1 + 124089 0.68 0.351384
Target:  5'- gGCGcCcGCGUaGCGCgCGCacaGGGCCg -3'
miRNA:   3'- gCGCaGcCGCAgCGCGgGCGg--CCCGG- -5'
23591 3' -66.5 NC_005261.1 + 123834 0.67 0.396588
Target:  5'- gGCGUCGugcaGCGUCGCGCU-GCCuagcGGCa -3'
miRNA:   3'- gCGCAGC----CGCAGCGCGGgCGGc---CCGg -5'
23591 3' -66.5 NC_005261.1 + 123728 0.66 0.462361
Target:  5'- aGCGUCGucGCgGUC-CGCaCCGCCaguaGGCCu -3'
miRNA:   3'- gCGCAGC--CG-CAGcGCG-GGCGGc---CCGG- -5'
23591 3' -66.5 NC_005261.1 + 123213 0.66 0.437004
Target:  5'- cCGCGUaaGCG-CG-GCCUGCCGccuagcGGCCg -3'
miRNA:   3'- -GCGCAgcCGCaGCgCGGGCGGC------CCGG- -5'
23591 3' -66.5 NC_005261.1 + 123032 0.69 0.332963
Target:  5'- aGCGUCGGCa--GCaggcaccccuucucuGCCCGCCGcucgaugaGGCCc -3'
miRNA:   3'- gCGCAGCCGcagCG---------------CGGGCGGC--------CCGG- -5'
23591 3' -66.5 NC_005261.1 + 122936 0.66 0.479687
Target:  5'- aGCG-CGGcCG-CGCGCUCaaccccaaacaGCgGGGCCc -3'
miRNA:   3'- gCGCaGCC-GCaGCGCGGG-----------CGgCCCGG- -5'
23591 3' -66.5 NC_005261.1 + 122786 0.66 0.444528
Target:  5'- gCGCGccagaCGGCGUccuuagagagccgCGCGCCCGCCa-GCa -3'
miRNA:   3'- -GCGCa----GCCGCA-------------GCGCGGGCGGccCGg -5'
23591 3' -66.5 NC_005261.1 + 122327 0.66 0.453821
Target:  5'- gGCGgucaggUGGCGcUCGCagaGCUCGCCuggcGGCCg -3'
miRNA:   3'- gCGCa-----GCCGC-AGCG---CGGGCGGc---CCGG- -5'
23591 3' -66.5 NC_005261.1 + 121771 0.69 0.297002
Target:  5'- aGCG-CGGUGggguggcCGCGgCCGgCGGGCUg -3'
miRNA:   3'- gCGCaGCCGCa------GCGCgGGCgGCCCGG- -5'
23591 3' -66.5 NC_005261.1 + 121667 0.73 0.173111
Target:  5'- cCGCGUCGGCGUagguguagGCGCCCuCCaGGUUg -3'
miRNA:   3'- -GCGCAGCCGCAg-------CGCGGGcGGcCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.