miRNA display CGI


Results 61 - 80 of 613 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23591 3' -66.5 NC_005261.1 + 121632 0.66 0.470983
Target:  5'- cCGC-UCGGCGgcCGcCGCCgGCgagcgCGGGCUg -3'
miRNA:   3'- -GCGcAGCCGCa-GC-GCGGgCG-----GCCCGG- -5'
23591 3' -66.5 NC_005261.1 + 121388 0.66 0.479687
Target:  5'- cCGCGgCGGCGgCGCcuGCCCGagugcgaCGGcuGCCg -3'
miRNA:   3'- -GCGCaGCCGCaGCG--CGGGCg------GCC--CGG- -5'
23591 3' -66.5 NC_005261.1 + 121175 0.67 0.381109
Target:  5'- gGCGcUCGGUGcaCGgGgCCgggGCCGGGCCc -3'
miRNA:   3'- gCGC-AGCCGCa-GCgCgGG---CGGCCCGG- -5'
23591 3' -66.5 NC_005261.1 + 121065 0.68 0.358659
Target:  5'- gCGCG-CGGUGU-GCGCggCGCCGGcgGCCg -3'
miRNA:   3'- -GCGCaGCCGCAgCGCGg-GCGGCC--CGG- -5'
23591 3' -66.5 NC_005261.1 + 120943 0.7 0.249385
Target:  5'- gCGCGggaaGGUGgaggcUCGCGcCCCGCgGGGCg -3'
miRNA:   3'- -GCGCag--CCGC-----AGCGC-GGGCGgCCCGg -5'
23591 3' -66.5 NC_005261.1 + 120583 0.68 0.351384
Target:  5'- -uCGUCaGCGUCGUGgCCGUCGccugcGGCCu -3'
miRNA:   3'- gcGCAGcCGCAGCGCgGGCGGC-----CCGG- -5'
23591 3' -66.5 NC_005261.1 + 120442 0.74 0.136358
Target:  5'- uGCG-CGGCGU-GCGCCUGCucuccgcgauagaCGGGCCc -3'
miRNA:   3'- gCGCaGCCGCAgCGCGGGCG-------------GCCCGG- -5'
23591 3' -66.5 NC_005261.1 + 120400 0.66 0.479687
Target:  5'- aGCagagCGGCGUCuGCGCUgagcgGCCuGGGCUg -3'
miRNA:   3'- gCGca--GCCGCAG-CGCGGg----CGG-CCCGG- -5'
23591 3' -66.5 NC_005261.1 + 120371 0.67 0.396588
Target:  5'- gCGCGaCGGCGcCGCGCCC-UCGcGCa -3'
miRNA:   3'- -GCGCaGCCGCaGCGCGGGcGGCcCGg -5'
23591 3' -66.5 NC_005261.1 + 119492 0.67 0.388798
Target:  5'- gGaCGcCGGCGcCGcCGCCCGCCaacagcacGcGGCCc -3'
miRNA:   3'- gC-GCaGCCGCaGC-GCGGGCGG--------C-CCGG- -5'
23591 3' -66.5 NC_005261.1 + 118991 0.73 0.177196
Target:  5'- uGCuUCuGCGUCGgGgCCUGCUGGGCCc -3'
miRNA:   3'- gCGcAGcCGCAGCgC-GGGCGGCCCGG- -5'
23591 3' -66.5 NC_005261.1 + 118927 0.69 0.303428
Target:  5'- cCGCGggcgCGGCGcCGCGCggcUgGCCGcGGCg -3'
miRNA:   3'- -GCGCa---GCCGCaGCGCG---GgCGGC-CCGg -5'
23591 3' -66.5 NC_005261.1 + 118851 0.74 0.150325
Target:  5'- gCGCGgagGGCGgCGCGCCCGCgGcccuGGCCu -3'
miRNA:   3'- -GCGCag-CCGCaGCGCGGGCGgC----CCGG- -5'
23591 3' -66.5 NC_005261.1 + 118809 0.67 0.404478
Target:  5'- -aCGUgGGCGUCuGCGCCC--UGGGCg -3'
miRNA:   3'- gcGCAgCCGCAG-CGCGGGcgGCCCGg -5'
23591 3' -66.5 NC_005261.1 + 118728 0.8 0.056562
Target:  5'- gGCGggcaCGGCGUCGCGCUCGCCGaGCa -3'
miRNA:   3'- gCGCa---GCCGCAGCGCGGGCGGCcCGg -5'
23591 3' -66.5 NC_005261.1 + 118611 0.69 0.297002
Target:  5'- gCGCuGUCGGcCGUUGCccuGgCCGCCGcGGCg -3'
miRNA:   3'- -GCG-CAGCC-GCAGCG---CgGGCGGC-CCGg -5'
23591 3' -66.5 NC_005261.1 + 118577 0.72 0.198928
Target:  5'- gCGCG-CGGCGgCGCGCgCCGCC--GCCg -3'
miRNA:   3'- -GCGCaGCCGCaGCGCG-GGCGGccCGG- -5'
23591 3' -66.5 NC_005261.1 + 118515 0.71 0.217952
Target:  5'- cCGC-UCGGCGagGCGCCCuGCCccGCCg -3'
miRNA:   3'- -GCGcAGCCGCagCGCGGG-CGGccCGG- -5'
23591 3' -66.5 NC_005261.1 + 118420 0.66 0.437004
Target:  5'- cCGCGcUGGCuGUCGcCGCcgcggacgCCGCCGcGGCg -3'
miRNA:   3'- -GCGCaGCCG-CAGC-GCG--------GGCGGC-CCGg -5'
23591 3' -66.5 NC_005261.1 + 118383 0.67 0.388798
Target:  5'- gCGCGgcccgaGGCGcUgGCGgCCGCgGGcGCCg -3'
miRNA:   3'- -GCGCag----CCGC-AgCGCgGGCGgCC-CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.