miRNA display CGI


Results 81 - 100 of 613 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23591 3' -66.5 NC_005261.1 + 118192 0.66 0.453821
Target:  5'- cCGCG--GGCccCGCGCCUGCCGcGCUg -3'
miRNA:   3'- -GCGCagCCGcaGCGCGGGCGGCcCGG- -5'
23591 3' -66.5 NC_005261.1 + 118121 0.66 0.445368
Target:  5'- gCGcCGcCGGC-UCGCG-CCGCUcGGCCg -3'
miRNA:   3'- -GC-GCaGCCGcAGCGCgGGCGGcCCGG- -5'
23591 3' -66.5 NC_005261.1 + 117850 0.68 0.33645
Target:  5'- cCGCGUC-GCGUCGCGUuauUCGgggggacCCGGGaCCg -3'
miRNA:   3'- -GCGCAGcCGCAGCGCG---GGC-------GGCCC-GG- -5'
23591 3' -66.5 NC_005261.1 + 117666 0.72 0.189969
Target:  5'- aGCGcCc-CGcCGCGCCCgGCCGGGCCc -3'
miRNA:   3'- gCGCaGccGCaGCGCGGG-CGGCCCGG- -5'
23591 3' -66.5 NC_005261.1 + 117483 0.74 0.136684
Target:  5'- aCGCGcugCuGCGcuucuaccUUGCGCCCGCCGGcGCCg -3'
miRNA:   3'- -GCGCa--GcCGC--------AGCGCGGGCGGCC-CGG- -5'
23591 3' -66.5 NC_005261.1 + 117386 0.68 0.358659
Target:  5'- gCGCGcugcuUCGGCGggGCGCCCgacuuucgGCUGGaGCUg -3'
miRNA:   3'- -GCGC-----AGCCGCagCGCGGG--------CGGCC-CGG- -5'
23591 3' -66.5 NC_005261.1 + 117346 0.66 0.437004
Target:  5'- cCGCGcccaaGGCG-C-CGCCCGCaaGGCCg -3'
miRNA:   3'- -GCGCag---CCGCaGcGCGGGCGgcCCGG- -5'
23591 3' -66.5 NC_005261.1 + 117245 0.66 0.488469
Target:  5'- uCGgGUCGG-GUCuCGUUCGCCGcGcGCCu -3'
miRNA:   3'- -GCgCAGCCgCAGcGCGGGCGGC-C-CGG- -5'
23591 3' -66.5 NC_005261.1 + 117188 0.69 0.304076
Target:  5'- gGCGgggCGGUGacguucuccuaccggCGCGCCCGCUgccuGGGCg -3'
miRNA:   3'- gCGCa--GCCGCa--------------GCGCGGGCGG----CCCGg -5'
23591 3' -66.5 NC_005261.1 + 116635 0.68 0.376544
Target:  5'- cCGaCGagGGCGaggcccgCGCGCCCGCCgccgaccugcuccgcGGcGCCg -3'
miRNA:   3'- -GC-GCagCCGCa------GCGCGGGCGG---------------CC-CGG- -5'
23591 3' -66.5 NC_005261.1 + 116518 0.69 0.316597
Target:  5'- cCGCGgCGGCG-CGagGCCCGCCGcuccgcGCCc -3'
miRNA:   3'- -GCGCaGCCGCaGCg-CGGGCGGCc-----CGG- -5'
23591 3' -66.5 NC_005261.1 + 116278 0.72 0.194403
Target:  5'- gGCGUCgugauGGCGUCGUGCUucaccaGCCGGuuGCCg -3'
miRNA:   3'- gCGCAG-----CCGCAGCGCGGg-----CGGCC--CGG- -5'
23591 3' -66.5 NC_005261.1 + 116165 0.66 0.437004
Target:  5'- gCGCGgucgCGGC--CGCGUccccgacgCCGCUGGGCg -3'
miRNA:   3'- -GCGCa---GCCGcaGCGCG--------GGCGGCCCGg -5'
23591 3' -66.5 NC_005261.1 + 115917 0.7 0.278362
Target:  5'- aGCGcCGGcCGcCGCGUCCGCgcgCGGGgCa -3'
miRNA:   3'- gCGCaGCC-GCaGCGCGGGCG---GCCCgG- -5'
23591 3' -66.5 NC_005261.1 + 115844 0.75 0.130298
Target:  5'- gCGCGUUGGCccgCGCGgccCCCGCCGaGGCg -3'
miRNA:   3'- -GCGCAGCCGca-GCGC---GGGCGGC-CCGg -5'
23591 3' -66.5 NC_005261.1 + 115474 0.67 0.428731
Target:  5'- gGUGUCGGuCG-CGgGCUCGgCCGcGGCg -3'
miRNA:   3'- gCGCAGCC-GCaGCgCGGGC-GGC-CCGg -5'
23591 3' -66.5 NC_005261.1 + 114977 0.69 0.303428
Target:  5'- aCGCGUCuuuauuGGCGggcCGgCCGCCGcGGCCc -3'
miRNA:   3'- -GCGCAG------CCGCagcGCgGGCGGC-CCGG- -5'
23591 3' -66.5 NC_005261.1 + 113588 0.71 0.238511
Target:  5'- cCGCGcUgGGCGaccUCGCGCCCGggcacCCGcuGGCCa -3'
miRNA:   3'- -GCGC-AgCCGC---AGCGCGGGC-----GGC--CCGG- -5'
23591 3' -66.5 NC_005261.1 + 113044 0.75 0.118346
Target:  5'- gCGCG-CGGCGUggCGCGCCaccgcuCGCUGGGCa -3'
miRNA:   3'- -GCGCaGCCGCA--GCGCGG------GCGGCCCGg -5'
23591 3' -66.5 NC_005261.1 + 112930 0.68 0.358659
Target:  5'- gGCGagGGCGgCGCGCUCGCCuucgacuucGCCg -3'
miRNA:   3'- gCGCagCCGCaGCGCGGGCGGcc-------CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.