Results 61 - 80 of 613 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23591 | 3' | -66.5 | NC_005261.1 | + | 104321 | 0.66 | 0.479687 |
Target: 5'- gCGCG-CGGaCGcgCGCGUCCagcgGCC-GGCCg -3' miRNA: 3'- -GCGCaGCC-GCa-GCGCGGG----CGGcCCGG- -5' |
|||||||
23591 | 3' | -66.5 | NC_005261.1 | + | 86905 | 0.66 | 0.479687 |
Target: 5'- gCGCG-CGGCGcggaccCGCGUccaCCGCCGccGCCg -3' miRNA: 3'- -GCGCaGCCGCa-----GCGCG---GGCGGCc-CGG- -5' |
|||||||
23591 | 3' | -66.5 | NC_005261.1 | + | 121632 | 0.66 | 0.470983 |
Target: 5'- cCGC-UCGGCGgcCGcCGCCgGCgagcgCGGGCUg -3' miRNA: 3'- -GCGcAGCCGCa-GC-GCGGgCG-----GCCCGG- -5' |
|||||||
23591 | 3' | -66.5 | NC_005261.1 | + | 78840 | 0.66 | 0.470983 |
Target: 5'- uGCGguacgcCGGCG--GCGCCCGCC--GCCg -3' miRNA: 3'- gCGCa-----GCCGCagCGCGGGCGGccCGG- -5' |
|||||||
23591 | 3' | -66.5 | NC_005261.1 | + | 71489 | 0.66 | 0.470983 |
Target: 5'- uGCG-CGGCGgccaggugCGCGCgaaagUCGgCGGGCUc -3' miRNA: 3'- gCGCaGCCGCa-------GCGCG-----GGCgGCCCGG- -5' |
|||||||
23591 | 3' | -66.5 | NC_005261.1 | + | 104440 | 0.66 | 0.470983 |
Target: 5'- aGCGggcCcGCGUCGC-CgCCGCCGGcggcGCCg -3' miRNA: 3'- gCGCa--GcCGCAGCGcG-GGCGGCC----CGG- -5' |
|||||||
23591 | 3' | -66.5 | NC_005261.1 | + | 62839 | 0.66 | 0.470983 |
Target: 5'- gGCGggggacUGGCGcgcccCGCGCCaCGCgGcGGCCu -3' miRNA: 3'- gCGCa-----GCCGCa----GCGCGG-GCGgC-CCGG- -5' |
|||||||
23591 | 3' | -66.5 | NC_005261.1 | + | 57790 | 0.66 | 0.470983 |
Target: 5'- gGCGUCGcGCGgCGgGCgCGCgaaGGCCg -3' miRNA: 3'- gCGCAGC-CGCaGCgCGgGCGgc-CCGG- -5' |
|||||||
23591 | 3' | -66.5 | NC_005261.1 | + | 17824 | 0.66 | 0.470117 |
Target: 5'- gGCGUUGcacuccaGCGagGCGuUCCGCaGGGCCu -3' miRNA: 3'- gCGCAGC-------CGCagCGC-GGGCGgCCCGG- -5' |
|||||||
23591 | 3' | -66.5 | NC_005261.1 | + | 99854 | 0.66 | 0.468388 |
Target: 5'- aGCGgcacCGGcCGcCGCGCgCCGCCgccgcucggcgcgaGGGCg -3' miRNA: 3'- gCGCa---GCC-GCaGCGCG-GGCGG--------------CCCGg -5' |
|||||||
23591 | 3' | -66.5 | NC_005261.1 | + | 15226 | 0.66 | 0.470983 |
Target: 5'- uCGCcgaGcCGGCGUUGaggcccCGCUCGCaguGGGCCg -3' miRNA: 3'- -GCG---CaGCCGCAGC------GCGGGCGg--CCCGG- -5' |
|||||||
23591 | 3' | -66.5 | NC_005261.1 | + | 28188 | 0.66 | 0.470983 |
Target: 5'- gCGCGccgaagcCGGCGgccUCGcCGCCgcUGCCGcGGCCc -3' miRNA: 3'- -GCGCa------GCCGC---AGC-GCGG--GCGGC-CCGG- -5' |
|||||||
23591 | 3' | -66.5 | NC_005261.1 | + | 83883 | 0.66 | 0.479687 |
Target: 5'- cCGgGUCaGCucugaGCGCggggCCGCCGGGCUc -3' miRNA: 3'- -GCgCAGcCGcag--CGCG----GGCGGCCCGG- -5' |
|||||||
23591 | 3' | -66.5 | NC_005261.1 | + | 55032 | 0.66 | 0.479687 |
Target: 5'- aGcCGcCGGCccCGCGCagcugCGCgGGGCCg -3' miRNA: 3'- gC-GCaGCCGcaGCGCGg----GCGgCCCGG- -5' |
|||||||
23591 | 3' | -66.5 | NC_005261.1 | + | 21820 | 0.66 | 0.479687 |
Target: 5'- gGCccgCGGCGggCGCGCgUGCgggCGGGCUc -3' miRNA: 3'- gCGca-GCCGCa-GCGCGgGCG---GCCCGG- -5' |
|||||||
23591 | 3' | -66.5 | NC_005261.1 | + | 636 | 0.66 | 0.479687 |
Target: 5'- uGUGgCGGCGgccgccagcgcCGCGUCC-CCGGcGCCg -3' miRNA: 3'- gCGCaGCCGCa----------GCGCGGGcGGCC-CGG- -5' |
|||||||
23591 | 3' | -66.5 | NC_005261.1 | + | 122936 | 0.66 | 0.479687 |
Target: 5'- aGCG-CGGcCG-CGCGCUCaaccccaaacaGCgGGGCCc -3' miRNA: 3'- gCGCaGCC-GCaGCGCGGG-----------CGgCCCGG- -5' |
|||||||
23591 | 3' | -66.5 | NC_005261.1 | + | 43775 | 0.66 | 0.478813 |
Target: 5'- uCGUGgggCGGCGcgcggaggGCGCCgcgggugagggggCGCCGGGCg -3' miRNA: 3'- -GCGCa--GCCGCag------CGCGG-------------GCGGCCCGg -5' |
|||||||
23591 | 3' | -66.5 | NC_005261.1 | + | 67800 | 0.66 | 0.474455 |
Target: 5'- cCGCcUCGGCGccgcccaguggcaacUCggGCGCgCGCaggaGGGCCg -3' miRNA: 3'- -GCGcAGCCGC---------------AG--CGCGgGCGg---CCCGG- -5' |
|||||||
23591 | 3' | -66.5 | NC_005261.1 | + | 109342 | 0.66 | 0.474455 |
Target: 5'- gGgGUCGGCGgcCGCGUcgccguccagCCGCUcgagcgcggcccagaGGGCCc -3' miRNA: 3'- gCgCAGCCGCa-GCGCG----------GGCGG---------------CCCGG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home