miRNA display CGI


Results 81 - 100 of 613 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23591 3' -66.5 NC_005261.1 + 76364 0.66 0.462361
Target:  5'- cCGCG-CGcGCGUgcaccCGCGCugCCGCCGccaacauaaaaaGGCCg -3'
miRNA:   3'- -GCGCaGC-CGCA-----GCGCG--GGCGGC------------CCGG- -5'
23591 3' -66.5 NC_005261.1 + 73150 0.66 0.462361
Target:  5'- uCGCGccgccaggCGGCGUUGuUGCUCGgCCGGGg- -3'
miRNA:   3'- -GCGCa-------GCCGCAGC-GCGGGC-GGCCCgg -5'
23591 3' -66.5 NC_005261.1 + 57539 0.66 0.462361
Target:  5'- gGCG-CGGCGcacgggcacacgUcgcaCGCGCCCGgcuCCGGcGCCg -3'
miRNA:   3'- gCGCaGCCGC------------A----GCGCGGGC---GGCC-CGG- -5'
23591 3' -66.5 NC_005261.1 + 39965 0.66 0.462361
Target:  5'- uCGCGcaggcUCaGCGgguugCGCGCgCCGCCGGcGUg -3'
miRNA:   3'- -GCGC-----AGcCGCa----GCGCG-GGCGGCC-CGg -5'
23591 3' -66.5 NC_005261.1 + 102429 0.66 0.462361
Target:  5'- uGCG-CGGCcgccuccUCgGCGCgCCGCCcGGCCu -3'
miRNA:   3'- gCGCaGCCGc------AG-CGCG-GGCGGcCCGG- -5'
23591 3' -66.5 NC_005261.1 + 55409 0.66 0.462361
Target:  5'- uGCaUCuacGCG-CGCGCCgGCUGGcGCCa -3'
miRNA:   3'- gCGcAGc--CGCaGCGCGGgCGGCC-CGG- -5'
23591 3' -66.5 NC_005261.1 + 123728 0.66 0.462361
Target:  5'- aGCGUCGucGCgGUC-CGCaCCGCCaguaGGCCu -3'
miRNA:   3'- gCGCAGC--CG-CAGcGCG-GGCGGc---CCGG- -5'
23591 3' -66.5 NC_005261.1 + 99854 0.66 0.468388
Target:  5'- aGCGgcacCGGcCGcCGCGCgCCGCCgccgcucggcgcgaGGGCg -3'
miRNA:   3'- gCGCa---GCC-GCaGCGCG-GGCGG--------------CCCGg -5'
23591 3' -66.5 NC_005261.1 + 17824 0.66 0.470117
Target:  5'- gGCGUUGcacuccaGCGagGCGuUCCGCaGGGCCu -3'
miRNA:   3'- gCGCAGC-------CGCagCGC-GGGCGgCCCGG- -5'
23591 3' -66.5 NC_005261.1 + 57790 0.66 0.470983
Target:  5'- gGCGUCGcGCGgCGgGCgCGCgaaGGCCg -3'
miRNA:   3'- gCGCAGC-CGCaGCgCGgGCGgc-CCGG- -5'
23591 3' -66.5 NC_005261.1 + 43775 0.66 0.478813
Target:  5'- uCGUGgggCGGCGcgcggaggGCGCCgcgggugagggggCGCCGGGCg -3'
miRNA:   3'- -GCGCa--GCCGCag------CGCGG-------------GCGGCCCGg -5'
23591 3' -66.5 NC_005261.1 + 67800 0.66 0.474455
Target:  5'- cCGCcUCGGCGccgcccaguggcaacUCggGCGCgCGCaggaGGGCCg -3'
miRNA:   3'- -GCGcAGCCGC---------------AG--CGCGgGCGg---CCCGG- -5'
23591 3' -66.5 NC_005261.1 + 109342 0.66 0.474455
Target:  5'- gGgGUCGGCGgcCGCGUcgccguccagCCGCUcgagcgcggcccagaGGGCCc -3'
miRNA:   3'- gCgCAGCCGCa-GCGCG----------GGCGG---------------CCCGG- -5'
23591 3' -66.5 NC_005261.1 + 28188 0.66 0.470983
Target:  5'- gCGCGccgaagcCGGCGgccUCGcCGCCgcUGCCGcGGCCc -3'
miRNA:   3'- -GCGCa------GCCGC---AGC-GCGG--GCGGC-CCGG- -5'
23591 3' -66.5 NC_005261.1 + 15226 0.66 0.470983
Target:  5'- uCGCcgaGcCGGCGUUGaggcccCGCUCGCaguGGGCCg -3'
miRNA:   3'- -GCG---CaGCCGCAGC------GCGGGCGg--CCCGG- -5'
23591 3' -66.5 NC_005261.1 + 121632 0.66 0.470983
Target:  5'- cCGC-UCGGCGgcCGcCGCCgGCgagcgCGGGCUg -3'
miRNA:   3'- -GCGcAGCCGCa-GC-GCGGgCG-----GCCCGG- -5'
23591 3' -66.5 NC_005261.1 + 78840 0.66 0.470983
Target:  5'- uGCGguacgcCGGCG--GCGCCCGCC--GCCg -3'
miRNA:   3'- gCGCa-----GCCGCagCGCGGGCGGccCGG- -5'
23591 3' -66.5 NC_005261.1 + 71489 0.66 0.470983
Target:  5'- uGCG-CGGCGgccaggugCGCGCgaaagUCGgCGGGCUc -3'
miRNA:   3'- gCGCaGCCGCa-------GCGCG-----GGCgGCCCGG- -5'
23591 3' -66.5 NC_005261.1 + 104440 0.66 0.470983
Target:  5'- aGCGggcCcGCGUCGC-CgCCGCCGGcggcGCCg -3'
miRNA:   3'- gCGCa--GcCGCAGCGcG-GGCGGCC----CGG- -5'
23591 3' -66.5 NC_005261.1 + 62839 0.66 0.470983
Target:  5'- gGCGggggacUGGCGcgcccCGCGCCaCGCgGcGGCCu -3'
miRNA:   3'- gCGCa-----GCCGCa----GCGCGG-GCGgC-CCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.