miRNA display CGI


Results 1 - 20 of 319 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23591 5' -57.1 NC_005261.1 + 118836 0.66 0.845076
Target:  5'- cACuGCCGCucugcGGCGCG-GAgggCGGcGCGCc -3'
miRNA:   3'- -UGuCGGCGu----CCGUGUaCUa--GUC-CGCG- -5'
23591 5' -57.1 NC_005261.1 + 73206 0.66 0.845076
Target:  5'- -uGGCCcCGGGCGCcucGAg-GGGCGCg -3'
miRNA:   3'- ugUCGGcGUCCGUGua-CUagUCCGCG- -5'
23591 5' -57.1 NC_005261.1 + 127327 0.66 0.845076
Target:  5'- uGCcGcCCGCGGGgGCcgGAgcggCGgGGCGCu -3'
miRNA:   3'- -UGuC-GGCGUCCgUGuaCUa---GU-CCGCG- -5'
23591 5' -57.1 NC_005261.1 + 50192 0.66 0.845076
Target:  5'- aGCAGCCGguGcagcaGCGCGUcGAcCcGGUGCa -3'
miRNA:   3'- -UGUCGGCguC-----CGUGUA-CUaGuCCGCG- -5'
23591 5' -57.1 NC_005261.1 + 65149 0.66 0.845076
Target:  5'- cCAGCCGCgccAGcGCGCA-GA--AGGUGCg -3'
miRNA:   3'- uGUCGGCG---UC-CGUGUaCUagUCCGCG- -5'
23591 5' -57.1 NC_005261.1 + 71379 0.66 0.845076
Target:  5'- cCAGCCGCGccgcgacccGGUacGCGUGGU-AGGCGg -3'
miRNA:   3'- uGUCGGCGU---------CCG--UGUACUAgUCCGCg -5'
23591 5' -57.1 NC_005261.1 + 5518 0.66 0.845076
Target:  5'- aGCGGCgGCgAGGcCGCcgGcuUCGGcGCGCa -3'
miRNA:   3'- -UGUCGgCG-UCC-GUGuaCu-AGUC-CGCG- -5'
23591 5' -57.1 NC_005261.1 + 30344 0.66 0.845076
Target:  5'- gGCGGCCGCGcucgcGGC-CcUGAaggCcGGCGCg -3'
miRNA:   3'- -UGUCGGCGU-----CCGuGuACUa--GuCCGCG- -5'
23591 5' -57.1 NC_005261.1 + 70476 0.66 0.842632
Target:  5'- --cGCCGCGGGUgcgcgcGCGUGAgCAcguagcuggcguucGGCGCc -3'
miRNA:   3'- uguCGGCGUCCG------UGUACUaGU--------------CCGCG- -5'
23591 5' -57.1 NC_005261.1 + 4511 0.66 0.83686
Target:  5'- cCAGUCGC--GCGCccGcgCGGGCGCc -3'
miRNA:   3'- uGUCGGCGucCGUGuaCuaGUCCGCG- -5'
23591 5' -57.1 NC_005261.1 + 11046 0.66 0.83686
Target:  5'- gGCGGCaCuCGGGCGCcgcc-CAGGCGCc -3'
miRNA:   3'- -UGUCG-GcGUCCGUGuacuaGUCCGCG- -5'
23591 5' -57.1 NC_005261.1 + 17665 0.66 0.83686
Target:  5'- gGCGcGCCGCGuGGCGg--GAUCAGuGgGCa -3'
miRNA:   3'- -UGU-CGGCGU-CCGUguaCUAGUC-CgCG- -5'
23591 5' -57.1 NC_005261.1 + 35055 0.66 0.83686
Target:  5'- gGCGGCCGCGcGGCGgc-GGUCuccGCGCc -3'
miRNA:   3'- -UGUCGGCGU-CCGUguaCUAGuc-CGCG- -5'
23591 5' -57.1 NC_005261.1 + 47688 0.66 0.83686
Target:  5'- cACGGCCGCccgcGGCGCcgcGUCGgcGGCGUc -3'
miRNA:   3'- -UGUCGGCGu---CCGUGuacUAGU--CCGCG- -5'
23591 5' -57.1 NC_005261.1 + 104718 0.66 0.83686
Target:  5'- gACGGCCGaGGGCGCGUcGugccgCGuGCGCg -3'
miRNA:   3'- -UGUCGGCgUCCGUGUA-Cua---GUcCGCG- -5'
23591 5' -57.1 NC_005261.1 + 23218 0.66 0.83686
Target:  5'- gGCGGCCGCGcgcaaaagccGGUGCAgcgggccggccUGcUCGGGCGa -3'
miRNA:   3'- -UGUCGGCGU----------CCGUGU-----------ACuAGUCCGCg -5'
23591 5' -57.1 NC_005261.1 + 5820 0.66 0.836028
Target:  5'- gGCAGCgGCGGccgaugcGCGCcgGGUUAcGGCGg -3'
miRNA:   3'- -UGUCGgCGUC-------CGUGuaCUAGU-CCGCg -5'
23591 5' -57.1 NC_005261.1 + 104165 0.66 0.828454
Target:  5'- cGCcGuCCGCGGGCGCcgcgcgcggGUcGUCGGGCGg -3'
miRNA:   3'- -UGuC-GGCGUCCGUG---------UAcUAGUCCGCg -5'
23591 5' -57.1 NC_005261.1 + 79587 0.66 0.828454
Target:  5'- aGCGGaaGUAGcGCuuGUGGUUgaGGGCGCa -3'
miRNA:   3'- -UGUCggCGUC-CGugUACUAG--UCCGCG- -5'
23591 5' -57.1 NC_005261.1 + 74702 0.66 0.828454
Target:  5'- gGCcGCCGCgcGGGCGCG-GAacCGGGcCGCg -3'
miRNA:   3'- -UGuCGGCG--UCCGUGUaCUa-GUCC-GCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.