miRNA display CGI


Results 1 - 20 of 319 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23591 5' -57.1 NC_005261.1 + 99270 1.12 0.00115
Target:  5'- aACAGCCGCAGGCACAUGAUCAGGCGCg -3'
miRNA:   3'- -UGUCGGCGUCCGUGUACUAGUCCGCG- -5'
23591 5' -57.1 NC_005261.1 + 125294 0.85 0.077001
Target:  5'- -aGGCCGCGGGCGCcgGAcccgCGGGCGCu -3'
miRNA:   3'- ugUCGGCGUCCGUGuaCUa---GUCCGCG- -5'
23591 5' -57.1 NC_005261.1 + 13123 0.81 0.134602
Target:  5'- gGCGGCCGCgGGGCGCguGUGGUCGgugacGGCGCg -3'
miRNA:   3'- -UGUCGGCG-UCCGUG--UACUAGU-----CCGCG- -5'
23591 5' -57.1 NC_005261.1 + 92598 0.8 0.165571
Target:  5'- cGCAGCCGCucgcGGCGCGUGccggggcccCGGGCGCg -3'
miRNA:   3'- -UGUCGGCGu---CCGUGUACua-------GUCCGCG- -5'
23591 5' -57.1 NC_005261.1 + 28762 0.79 0.192854
Target:  5'- cGCGGCCGgGGGCGCcUGGgccgcggcgCGGGCGCu -3'
miRNA:   3'- -UGUCGGCgUCCGUGuACUa--------GUCCGCG- -5'
23591 5' -57.1 NC_005261.1 + 123862 0.78 0.218524
Target:  5'- gGCAGCCGCucGUACggGAUCuuGGCGCg -3'
miRNA:   3'- -UGUCGGCGucCGUGuaCUAGu-CCGCG- -5'
23591 5' -57.1 NC_005261.1 + 44045 0.78 0.223997
Target:  5'- gGCGGCCGCGGGCggGCAgcaGAUCcAGGaCGCc -3'
miRNA:   3'- -UGUCGGCGUCCG--UGUa--CUAG-UCC-GCG- -5'
23591 5' -57.1 NC_005261.1 + 98049 0.78 0.229585
Target:  5'- gGCGGCCGCGGGCGgCggGAccgCGGGCGg -3'
miRNA:   3'- -UGUCGGCGUCCGU-GuaCUa--GUCCGCg -5'
23591 5' -57.1 NC_005261.1 + 107243 0.77 0.247058
Target:  5'- cGCAGCCGCccacccgcGGGCGCGcGGgcacgggCGGGCGCg -3'
miRNA:   3'- -UGUCGGCG--------UCCGUGUaCUa------GUCCGCG- -5'
23591 5' -57.1 NC_005261.1 + 54491 0.77 0.25931
Target:  5'- -gGGCgGCAGGCGCAaacgCAGGCGCc -3'
miRNA:   3'- ugUCGgCGUCCGUGUacuaGUCCGCG- -5'
23591 5' -57.1 NC_005261.1 + 102462 0.76 0.306099
Target:  5'- uCGGCgCGCAGGCGCcgGAccUCcucGGCGCg -3'
miRNA:   3'- uGUCG-GCGUCCGUGuaCU--AGu--CCGCG- -5'
23591 5' -57.1 NC_005261.1 + 99716 0.76 0.306099
Target:  5'- cACGGUCGC--GCGCGUGGccgcgUCAGGCGCg -3'
miRNA:   3'- -UGUCGGCGucCGUGUACU-----AGUCCGCG- -5'
23591 5' -57.1 NC_005261.1 + 105230 0.76 0.313288
Target:  5'- cGCGGCCGC-GGC-CGUGAUCugcGGCGg -3'
miRNA:   3'- -UGUCGGCGuCCGuGUACUAGu--CCGCg -5'
23591 5' -57.1 NC_005261.1 + 12301 0.75 0.318396
Target:  5'- --cGCCGCGGGCACGggcgcguagccggCGGGCGCg -3'
miRNA:   3'- uguCGGCGUCCGUGUacua---------GUCCGCG- -5'
23591 5' -57.1 NC_005261.1 + 102159 0.75 0.320604
Target:  5'- cGCAGCUGCGccagcggcggcGGCACGUcGAuccgcgcguucUCGGGCGCg -3'
miRNA:   3'- -UGUCGGCGU-----------CCGUGUA-CU-----------AGUCCGCG- -5'
23591 5' -57.1 NC_005261.1 + 100608 0.75 0.328048
Target:  5'- cGCGGCCGCgcAGGUGCA-GGUCccgcucgcacAGGCGCg -3'
miRNA:   3'- -UGUCGGCG--UCCGUGUaCUAG----------UCCGCG- -5'
23591 5' -57.1 NC_005261.1 + 105350 0.75 0.343316
Target:  5'- cACGGCCgugagGCAGGC-CGUGA-CAGGCGg -3'
miRNA:   3'- -UGUCGG-----CGUCCGuGUACUaGUCCGCg -5'
23591 5' -57.1 NC_005261.1 + 8802 0.75 0.343316
Target:  5'- uGCAGCCGCcgaGGGCu--UGAagGGGCGCc -3'
miRNA:   3'- -UGUCGGCG---UCCGuguACUagUCCGCG- -5'
23591 5' -57.1 NC_005261.1 + 118400 0.74 0.359089
Target:  5'- gGCGGCCGCGGGCGCcg---CAGccGCGCu -3'
miRNA:   3'- -UGUCGGCGUCCGUGuacuaGUC--CGCG- -5'
23591 5' -57.1 NC_005261.1 + 100314 0.74 0.359089
Target:  5'- --cGUCGCGGGCGCGcucGAUCuccAGGCGCa -3'
miRNA:   3'- uguCGGCGUCCGUGUa--CUAG---UCCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.