Results 21 - 32 of 32 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
23592 | 3' | -57.8 | NC_005261.1 | + | 137905 | 0.68 | 0.656141 |
Target: 5'- -cCUggugCUCGCGGGCC-CC-GCgAGCGGg -3' miRNA: 3'- uaGAa---GAGCGUCCGGaGGuCG-UCGUC- -5' |
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23592 | 3' | -57.8 | NC_005261.1 | + | 106505 | 0.68 | 0.666518 |
Target: 5'- -aCUUCcgaGUAGcCCUCCAGCAGCGc -3' miRNA: 3'- uaGAAGag-CGUCcGGAGGUCGUCGUc -5' |
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23592 | 3' | -57.8 | NC_005261.1 | + | 62373 | 0.69 | 0.593755 |
Target: 5'- ----gCUCGCGcGCCUgCGGCAGCGGc -3' miRNA: 3'- uagaaGAGCGUcCGGAgGUCGUCGUC- -5' |
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23592 | 3' | -57.8 | NC_005261.1 | + | 46246 | 0.69 | 0.573109 |
Target: 5'- -----gUCGCAGGCCg-CGGCGGCGGc -3' miRNA: 3'- uagaagAGCGUCCGGagGUCGUCGUC- -5' |
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23592 | 3' | -57.8 | NC_005261.1 | + | 127825 | 0.69 | 0.562846 |
Target: 5'- cUCgcgCUCGC-GGCCgCgAGCAGCGGa -3' miRNA: 3'- uAGaa-GAGCGuCCGGaGgUCGUCGUC- -5' |
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23592 | 3' | -57.8 | NC_005261.1 | + | 62446 | 0.7 | 0.522362 |
Target: 5'- -----gUCGcCGGGCC-CCAGCAGCGGc -3' miRNA: 3'- uagaagAGC-GUCCGGaGGUCGUCGUC- -5' |
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23592 | 3' | -57.8 | NC_005261.1 | + | 3658 | 0.7 | 0.532386 |
Target: 5'- cGUCUggagCGCAGGCCgcggCCGGCAggccGCGGc -3' miRNA: 3'- -UAGAaga-GCGUCCGGa---GGUCGU----CGUC- -5' |
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23592 | 3' | -57.8 | NC_005261.1 | + | 91961 | 0.7 | 0.542479 |
Target: 5'- gAUCUUguacccggCGCAGGCCgUCAGCAGguGg -3' miRNA: 3'- -UAGAAga------GCGUCCGGaGGUCGUCguC- -5' |
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23592 | 3' | -57.8 | NC_005261.1 | + | 4444 | 0.72 | 0.409109 |
Target: 5'- cGUCagCa-GCGGGcCCUCCAGCGGCGGc -3' miRNA: 3'- -UAGaaGagCGUCC-GGAGGUCGUCGUC- -5' |
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23592 | 3' | -57.8 | NC_005261.1 | + | 78973 | 0.73 | 0.358505 |
Target: 5'- gAUCaUCUCGCGGGCCugcUCCAGCuuAGCc- -3' miRNA: 3'- -UAGaAGAGCGUCCGG---AGGUCG--UCGuc -5' |
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23592 | 3' | -57.8 | NC_005261.1 | + | 101667 | 0.75 | 0.277606 |
Target: 5'- cAUCUgcgcCUCGUAGGCCgagCCGGCgaAGCGGg -3' miRNA: 3'- -UAGAa---GAGCGUCCGGa--GGUCG--UCGUC- -5' |
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23592 | 3' | -57.8 | NC_005261.1 | + | 96641 | 1.06 | 0.002168 |
Target: 5'- gAUCUUCUCGCAGGCCUCCAGCAGCAGc -3' miRNA: 3'- -UAGAAGAGCGUCCGGAGGUCGUCGUC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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