miRNA display CGI


Results 1 - 20 of 32 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23592 3' -57.8 NC_005261.1 + 222 0.68 0.656141
Target:  5'- -cCUggugCUCGCGGGCC-CC-GCgAGCGGg -3'
miRNA:   3'- uaGAa---GAGCGUCCGGaGGuCG-UCGUC- -5'
23592 3' -57.8 NC_005261.1 + 3596 0.66 0.757499
Target:  5'- -----gUCGCGGGCCgcgCCAaGCAGCu- -3'
miRNA:   3'- uagaagAGCGUCCGGa--GGU-CGUCGuc -5'
23592 3' -57.8 NC_005261.1 + 3658 0.7 0.532386
Target:  5'- cGUCUggagCGCAGGCCgcggCCGGCAggccGCGGc -3'
miRNA:   3'- -UAGAaga-GCGUCCGGa---GGUCGU----CGUC- -5'
23592 3' -57.8 NC_005261.1 + 4022 0.66 0.776704
Target:  5'- ------aCGCAGGCCgCCAcguGCGGCAGc -3'
miRNA:   3'- uagaagaGCGUCCGGaGGU---CGUCGUC- -5'
23592 3' -57.8 NC_005261.1 + 4444 0.72 0.409109
Target:  5'- cGUCagCa-GCGGGcCCUCCAGCGGCGGc -3'
miRNA:   3'- -UAGaaGagCGUCC-GGAGGUCGUCGUC- -5'
23592 3' -57.8 NC_005261.1 + 29544 0.66 0.74772
Target:  5'- ----gCUCGCGGGCCcggaCCuGCAGCuGg -3'
miRNA:   3'- uagaaGAGCGUCCGGa---GGuCGUCGuC- -5'
23592 3' -57.8 NC_005261.1 + 46246 0.69 0.573109
Target:  5'- -----gUCGCAGGCCg-CGGCGGCGGc -3'
miRNA:   3'- uagaagAGCGUCCGGagGUCGUCGUC- -5'
23592 3' -57.8 NC_005261.1 + 47843 0.67 0.676867
Target:  5'- -cCUUCcacgUCGCGgcguGGCCgagcguagCCAGCGGCAGc -3'
miRNA:   3'- uaGAAG----AGCGU----CCGGa-------GGUCGUCGUC- -5'
23592 3' -57.8 NC_005261.1 + 54472 0.67 0.71779
Target:  5'- gGUCUggcaUC-CGGGCgUCgGGCGGCAGg -3'
miRNA:   3'- -UAGAag--AGcGUCCGgAGgUCGUCGUC- -5'
23592 3' -57.8 NC_005261.1 + 56776 0.67 0.716779
Target:  5'- -cCUUCUcagacgcCGCGGuuGCCcacuUCCGGCAGCGGg -3'
miRNA:   3'- uaGAAGA-------GCGUC--CGG----AGGUCGUCGUC- -5'
23592 3' -57.8 NC_005261.1 + 62373 0.69 0.593755
Target:  5'- ----gCUCGCGcGCCUgCGGCAGCGGc -3'
miRNA:   3'- uagaaGAGCGUcCGGAgGUCGUCGUC- -5'
23592 3' -57.8 NC_005261.1 + 62446 0.7 0.522362
Target:  5'- -----gUCGcCGGGCC-CCAGCAGCGGc -3'
miRNA:   3'- uagaagAGC-GUCCGGaGGUCGUCGUC- -5'
23592 3' -57.8 NC_005261.1 + 71625 0.66 0.776704
Target:  5'- ------gCGCGGGCC-CgGGCGGCGGg -3'
miRNA:   3'- uagaagaGCGUCCGGaGgUCGUCGUC- -5'
23592 3' -57.8 NC_005261.1 + 78973 0.73 0.358505
Target:  5'- gAUCaUCUCGCGGGCCugcUCCAGCuuAGCc- -3'
miRNA:   3'- -UAGaAGAGCGUCCGG---AGGUCG--UCGuc -5'
23592 3' -57.8 NC_005261.1 + 81452 0.66 0.78611
Target:  5'- -------gGCGGGCgCcgCCAGCAGCAGg -3'
miRNA:   3'- uagaagagCGUCCG-Ga-GGUCGUCGUC- -5'
23592 3' -57.8 NC_005261.1 + 84625 0.67 0.676867
Target:  5'- ---aUCUCGCGGagcGCCUCCAcCAGCGu -3'
miRNA:   3'- uagaAGAGCGUC---CGGAGGUcGUCGUc -5'
23592 3' -57.8 NC_005261.1 + 91961 0.7 0.542479
Target:  5'- gAUCUUguacccggCGCAGGCCgUCAGCAGguGg -3'
miRNA:   3'- -UAGAAga------GCGUCCGGaGGUCGUCguC- -5'
23592 3' -57.8 NC_005261.1 + 93620 0.67 0.727855
Target:  5'- gGUCgcgaCGCcGGCCagCAGCAGCAGc -3'
miRNA:   3'- -UAGaagaGCGuCCGGagGUCGUCGUC- -5'
23592 3' -57.8 NC_005261.1 + 95374 0.66 0.767164
Target:  5'- -aCUUCUCGC-GGCCccCCGGC-GCGc -3'
miRNA:   3'- uaGAAGAGCGuCCGGa-GGUCGuCGUc -5'
23592 3' -57.8 NC_005261.1 + 96641 1.06 0.002168
Target:  5'- gAUCUUCUCGCAGGCCUCCAGCAGCAGc -3'
miRNA:   3'- -UAGAAGAGCGUCCGGAGGUCGUCGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.