miRNA display CGI


Results 21 - 32 of 32 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23592 3' -57.8 NC_005261.1 + 101387 0.68 0.656141
Target:  5'- -cCUcCUC-CAcGGCCgCCAGCAGCAGc -3'
miRNA:   3'- uaGAaGAGcGU-CCGGaGGUCGUCGUC- -5'
23592 3' -57.8 NC_005261.1 + 101667 0.75 0.277606
Target:  5'- cAUCUgcgcCUCGUAGGCCgagCCGGCgaAGCGGg -3'
miRNA:   3'- -UAGAa---GAGCGUCCGGa--GGUCG--UCGUC- -5'
23592 3' -57.8 NC_005261.1 + 106505 0.68 0.666518
Target:  5'- -aCUUCcgaGUAGcCCUCCAGCAGCGc -3'
miRNA:   3'- uaGAAGag-CGUCcGGAGGUCGUCGUc -5'
23592 3' -57.8 NC_005261.1 + 112214 0.66 0.767164
Target:  5'- cUCaaCcCGCAGGUgaCCAGCAGCAc -3'
miRNA:   3'- uAGaaGaGCGUCCGgaGGUCGUCGUc -5'
23592 3' -57.8 NC_005261.1 + 115393 0.66 0.767164
Target:  5'- gGUCUUCa-GCGGGUCgucgaccgCgGGCGGCAGc -3'
miRNA:   3'- -UAGAAGagCGUCCGGa-------GgUCGUCGUC- -5'
23592 3' -57.8 NC_005261.1 + 117054 0.66 0.74772
Target:  5'- -cCUUUUCGCAGGCCagCCuGGUuaAGCAc -3'
miRNA:   3'- uaGAAGAGCGUCCGGa-GG-UCG--UCGUc -5'
23592 3' -57.8 NC_005261.1 + 121818 0.66 0.776704
Target:  5'- -gCUgggCUCuGCGGGCCgCC-GCGGCGGc -3'
miRNA:   3'- uaGAa--GAG-CGUCCGGaGGuCGUCGUC- -5'
23592 3' -57.8 NC_005261.1 + 122982 0.68 0.645743
Target:  5'- ----gCUCGguGGCCUCCuGCAGgGc -3'
miRNA:   3'- uagaaGAGCguCCGGAGGuCGUCgUc -5'
23592 3' -57.8 NC_005261.1 + 127825 0.69 0.562846
Target:  5'- cUCgcgCUCGC-GGCCgCgAGCAGCGGa -3'
miRNA:   3'- uAGaa-GAGCGuCCGGaGgUCGUCGUC- -5'
23592 3' -57.8 NC_005261.1 + 135884 0.68 0.624923
Target:  5'- -------aGCAGGCCUgCGGCAGCAc -3'
miRNA:   3'- uagaagagCGUCCGGAgGUCGUCGUc -5'
23592 3' -57.8 NC_005261.1 + 136440 0.66 0.78611
Target:  5'- ----cCUCGCGGGCgUCgCAGgGGCAc -3'
miRNA:   3'- uagaaGAGCGUCCGgAG-GUCgUCGUc -5'
23592 3' -57.8 NC_005261.1 + 137905 0.68 0.656141
Target:  5'- -cCUggugCUCGCGGGCC-CC-GCgAGCGGg -3'
miRNA:   3'- uaGAa---GAGCGUCCGGaGGuCG-UCGUC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.