miRNA display CGI


Results 1 - 20 of 103 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23593 5' -61.5 NC_005261.1 + 45269 0.66 0.671811
Target:  5'- -cGUGcccgCCGCCGUGcuGCCguaCCGGCuGGCc -3'
miRNA:   3'- uaUACa---GGCGGCAC--UGG---GGCCG-CCGc -5'
23593 5' -61.5 NC_005261.1 + 118429 0.66 0.671811
Target:  5'- --cUGUcgCCGCCGcgGACgCCGccGCGGCGc -3'
miRNA:   3'- uauACA--GGCGGCa-CUGgGGC--CGCCGC- -5'
23593 5' -61.5 NC_005261.1 + 32518 0.66 0.671811
Target:  5'- ---gGUCCGCgccgcgccCGgccccGGCCCCGGCcGCGg -3'
miRNA:   3'- uauaCAGGCG--------GCa----CUGGGGCCGcCGC- -5'
23593 5' -61.5 NC_005261.1 + 2504 0.66 0.671811
Target:  5'- ---gGUCCgcgagccgcGCCGcGACCUCGG-GGCGg -3'
miRNA:   3'- uauaCAGG---------CGGCaCUGGGGCCgCCGC- -5'
23593 5' -61.5 NC_005261.1 + 99454 0.66 0.671811
Target:  5'- ---aGagCGCgGgccGACCCgCGGCGGCGc -3'
miRNA:   3'- uauaCagGCGgCa--CUGGG-GCCGCCGC- -5'
23593 5' -61.5 NC_005261.1 + 12297 0.66 0.669837
Target:  5'- ---cGUCCGCCGcgGGCacgggcgcguagCCGGCgGGCGc -3'
miRNA:   3'- uauaCAGGCGGCa-CUGg-----------GGCCG-CCGC- -5'
23593 5' -61.5 NC_005261.1 + 123057 0.66 0.66193
Target:  5'- --cUGcCCGCCGcucgaugaGGCCCCgagaGGCGGCc -3'
miRNA:   3'- uauACaGGCGGCa-------CUGGGG----CCGCCGc -5'
23593 5' -61.5 NC_005261.1 + 36713 0.66 0.66193
Target:  5'- --cUGaCCGCCGgcccuacccggGACCgCGGCGGUc -3'
miRNA:   3'- uauACaGGCGGCa----------CUGGgGCCGCCGc -5'
23593 5' -61.5 NC_005261.1 + 20024 0.66 0.652025
Target:  5'- ---cGUCCGCgGUcagcgGGCCgguuccguCCGGCGGUGu -3'
miRNA:   3'- uauaCAGGCGgCA-----CUGG--------GGCCGCCGC- -5'
23593 5' -61.5 NC_005261.1 + 28851 0.66 0.652025
Target:  5'- ---cGgCCGUCGUGGCCgCCGcccuugaggcuGCGGCGc -3'
miRNA:   3'- uauaCaGGCGGCACUGG-GGC-----------CGCCGC- -5'
23593 5' -61.5 NC_005261.1 + 35688 0.66 0.652025
Target:  5'- -----cCCGCCGgcgaGCCCCGGUGGg- -3'
miRNA:   3'- uauacaGGCGGCac--UGGGGCCGCCgc -5'
23593 5' -61.5 NC_005261.1 + 106535 0.66 0.652025
Target:  5'- -----aCCGCCu---CCUCGGCGGCGg -3'
miRNA:   3'- uauacaGGCGGcacuGGGGCCGCCGC- -5'
23593 5' -61.5 NC_005261.1 + 118536 0.66 0.652025
Target:  5'- -----cCCGCC--GACCCCuGCGGCGc -3'
miRNA:   3'- uauacaGGCGGcaCUGGGGcCGCCGC- -5'
23593 5' -61.5 NC_005261.1 + 21803 0.66 0.642106
Target:  5'- ---aG-CCGCCGgccgggccgGGCCCgCGGCgGGCGc -3'
miRNA:   3'- uauaCaGGCGGCa--------CUGGG-GCCG-CCGC- -5'
23593 5' -61.5 NC_005261.1 + 62445 0.66 0.642106
Target:  5'- ---gGU-CGCCG-GGCCCCagcaGCGGCGg -3'
miRNA:   3'- uauaCAgGCGGCaCUGGGGc---CGCCGC- -5'
23593 5' -61.5 NC_005261.1 + 33785 0.66 0.642106
Target:  5'- ---cGagCGCUG-GGCCCCgcgcgGGCGGCGg -3'
miRNA:   3'- uauaCagGCGGCaCUGGGG-----CCGCCGC- -5'
23593 5' -61.5 NC_005261.1 + 71221 0.66 0.642106
Target:  5'- -gGUGcgcgCgCGCaCGcGGCCCuCGGCGGCGc -3'
miRNA:   3'- uaUACa---G-GCG-GCaCUGGG-GCCGCCGC- -5'
23593 5' -61.5 NC_005261.1 + 81222 0.66 0.642106
Target:  5'- -----aCCaCCGUGGCgCCCgagGGCGGCGg -3'
miRNA:   3'- uauacaGGcGGCACUG-GGG---CCGCCGC- -5'
23593 5' -61.5 NC_005261.1 + 95744 0.66 0.642106
Target:  5'- ---cGgcgCCGCCGccGCCgCCGGgGGCGc -3'
miRNA:   3'- uauaCa--GGCGGCacUGG-GGCCgCCGC- -5'
23593 5' -61.5 NC_005261.1 + 23448 0.66 0.639129
Target:  5'- ---aGUCCucagggcagaaggcGCCa-GGCCCgCGGCGGCGa -3'
miRNA:   3'- uauaCAGG--------------CGGcaCUGGG-GCCGCCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.