miRNA display CGI


Results 21 - 40 of 280 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23594 3' -58.9 NC_005261.1 + 74662 0.75 0.301888
Target:  5'- uCGCGCaGGCCgggGACGCGGAcgcgaccGCGCGGg -3'
miRNA:   3'- -GUGCGaCCGGag-CUGCGUCU-------CGUGCC- -5'
23594 3' -58.9 NC_005261.1 + 75485 0.75 0.309501
Target:  5'- gGCGCgGGCCgcuaCGAgCGCGGGGCGCuGGa -3'
miRNA:   3'- gUGCGaCCGGa---GCU-GCGUCUCGUG-CC- -5'
23594 3' -58.9 NC_005261.1 + 32051 0.74 0.322993
Target:  5'- gGCGCaaggacaUGGCC---GCGCAGAGCGCGGc -3'
miRNA:   3'- gUGCG-------ACCGGagcUGCGUCUCGUGCC- -5'
23594 3' -58.9 NC_005261.1 + 68280 0.74 0.323715
Target:  5'- cCGCGCggcggGGCCcCGGcCGCGG-GCGCGGa -3'
miRNA:   3'- -GUGCGa----CCGGaGCU-GCGUCuCGUGCC- -5'
23594 3' -58.9 NC_005261.1 + 31356 0.74 0.323715
Target:  5'- gGCGCgUGGCCUgGAuguCGCAGAuCGCGGa -3'
miRNA:   3'- gUGCG-ACCGGAgCU---GCGUCUcGUGCC- -5'
23594 3' -58.9 NC_005261.1 + 30126 0.74 0.331003
Target:  5'- gGCGC-GGCCcgCGACGCgguGGAGCGCGc -3'
miRNA:   3'- gUGCGaCCGGa-GCUGCG---UCUCGUGCc -5'
23594 3' -58.9 NC_005261.1 + 132626 0.74 0.331003
Target:  5'- gGCGCUGGCgCcgagGACGCGG-GCGCGGc -3'
miRNA:   3'- gUGCGACCG-Gag--CUGCGUCuCGUGCC- -5'
23594 3' -58.9 NC_005261.1 + 76082 0.74 0.345938
Target:  5'- gGCuGCUGcGCCUCGugGCgcuGGAGCugGa -3'
miRNA:   3'- gUG-CGAC-CGGAGCugCG---UCUCGugCc -5'
23594 3' -58.9 NC_005261.1 + 51355 0.74 0.345938
Target:  5'- -cCGCUGGgCUgucCGGCGCGGAGUACGc -3'
miRNA:   3'- guGCGACCgGA---GCUGCGUCUCGUGCc -5'
23594 3' -58.9 NC_005261.1 + 14867 0.74 0.345938
Target:  5'- uCGCGCaguucGCCaucgCGGCGCAGAGCGCGa -3'
miRNA:   3'- -GUGCGac---CGGa---GCUGCGUCUCGUGCc -5'
23594 3' -58.9 NC_005261.1 + 50974 0.74 0.361351
Target:  5'- gCGCGCgaaaccucucGGCCgacggCGGCGCGuGGGCGCGGc -3'
miRNA:   3'- -GUGCGa---------CCGGa----GCUGCGU-CUCGUGCC- -5'
23594 3' -58.9 NC_005261.1 + 14989 0.73 0.369234
Target:  5'- cCGCGCcGGCCgCGcC-CGGAGCGCGGg -3'
miRNA:   3'- -GUGCGaCCGGaGCuGcGUCUCGUGCC- -5'
23594 3' -58.9 NC_005261.1 + 102447 0.73 0.369234
Target:  5'- gCGCGCcgcccGGCCUCGGCGCGcaGGCGcCGGa -3'
miRNA:   3'- -GUGCGa----CCGGAGCUGCGUc-UCGU-GCC- -5'
23594 3' -58.9 NC_005261.1 + 74698 0.73 0.377234
Target:  5'- --aGCUGGCCgCcGCGCGG-GCGCGGa -3'
miRNA:   3'- gugCGACCGGaGcUGCGUCuCGUGCC- -5'
23594 3' -58.9 NC_005261.1 + 58277 0.73 0.377234
Target:  5'- cCGCGCUcacggGGCCggcgCGcCGgGGGGCGCGGg -3'
miRNA:   3'- -GUGCGA-----CCGGa---GCuGCgUCUCGUGCC- -5'
23594 3' -58.9 NC_005261.1 + 120641 0.73 0.38535
Target:  5'- gGCcCUGuGCCUgCGGCGCAaGGCGCGGg -3'
miRNA:   3'- gUGcGAC-CGGA-GCUGCGUcUCGUGCC- -5'
23594 3' -58.9 NC_005261.1 + 60101 0.73 0.393581
Target:  5'- gCACGCUGGCCagCG-CGCccgcGGGCACGu -3'
miRNA:   3'- -GUGCGACCGGa-GCuGCGu---CUCGUGCc -5'
23594 3' -58.9 NC_005261.1 + 57962 0.73 0.401925
Target:  5'- uGCGCacGCCggCGACGCAGGcgcGCGCGGc -3'
miRNA:   3'- gUGCGacCGGa-GCUGCGUCU---CGUGCC- -5'
23594 3' -58.9 NC_005261.1 + 57848 0.73 0.405294
Target:  5'- gGCGCgggcggcaaGGCCUCGGCGCucGGgucgggaagucggccGGCACGGg -3'
miRNA:   3'- gUGCGa--------CCGGAGCUGCG--UC---------------UCGUGCC- -5'
23594 3' -58.9 NC_005261.1 + 126939 0.73 0.410381
Target:  5'- aGCGC-GGCCaggGGCGCcGGGCGCGGg -3'
miRNA:   3'- gUGCGaCCGGag-CUGCGuCUCGUGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.