miRNA display CGI


Results 21 - 40 of 280 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23594 3' -58.9 NC_005261.1 + 4960 0.66 0.784192
Target:  5'- gGCGCccccGGCCgCGGCGUccucuGGGGCcCGGa -3'
miRNA:   3'- gUGCGa---CCGGaGCUGCG-----UCUCGuGCC- -5'
23594 3' -58.9 NC_005261.1 + 5146 0.67 0.737516
Target:  5'- uCGCGCgccucGGCC-CGGCgggccgcgucgaGCAGGGC-CGGg -3'
miRNA:   3'- -GUGCGa----CCGGaGCUG------------CGUCUCGuGCC- -5'
23594 3' -58.9 NC_005261.1 + 5275 0.67 0.718165
Target:  5'- gACGCcaUGGCCggCcGCGguGcGCGCGGg -3'
miRNA:   3'- gUGCG--ACCGGa-GcUGCguCuCGUGCC- -5'
23594 3' -58.9 NC_005261.1 + 5531 0.7 0.53904
Target:  5'- -cCGCcGGCUUCGGCGCGcAGCgagACGGg -3'
miRNA:   3'- guGCGaCCGGAGCUGCGUcUCG---UGCC- -5'
23594 3' -58.9 NC_005261.1 + 6413 0.68 0.648649
Target:  5'- gCGCGUUGGCC-CGGCcuGCucgcGAGgGCGGu -3'
miRNA:   3'- -GUGCGACCGGaGCUG--CGu---CUCgUGCC- -5'
23594 3' -58.9 NC_005261.1 + 10021 0.66 0.765857
Target:  5'- cCGgGCgGGCCUCG-CGUcgGGGGCGCu- -3'
miRNA:   3'- -GUgCGaCCGGAGCuGCG--UCUCGUGcc -5'
23594 3' -58.9 NC_005261.1 + 12021 0.7 0.552752
Target:  5'- aGCGCUcGCCcgCGACGCgcucgagccccagccGGAGCACGu -3'
miRNA:   3'- gUGCGAcCGGa-GCUGCG---------------UCUCGUGCc -5'
23594 3' -58.9 NC_005261.1 + 12550 0.66 0.756513
Target:  5'- aUACGCgggGGCCcCG-CGCcGGGCaacGCGGg -3'
miRNA:   3'- -GUGCGa--CCGGaGCuGCGuCUCG---UGCC- -5'
23594 3' -58.9 NC_005261.1 + 12946 0.66 0.802001
Target:  5'- uGCGCUucuGGCC-CG-CGCGGcGCGCGc -3'
miRNA:   3'- gUGCGA---CCGGaGCuGCGUCuCGUGCc -5'
23594 3' -58.9 NC_005261.1 + 13309 0.7 0.515815
Target:  5'- gACGggGGCCUCGuACGCAGcgcccucgcacucGCGCGGc -3'
miRNA:   3'- gUGCgaCCGGAGC-UGCGUCu------------CGUGCC- -5'
23594 3' -58.9 NC_005261.1 + 13941 0.66 0.793167
Target:  5'- uCGCGUUgcGGCCcagCcGCGCGGAaacGCGCGGu -3'
miRNA:   3'- -GUGCGA--CCGGa--GcUGCGUCU---CGUGCC- -5'
23594 3' -58.9 NC_005261.1 + 14154 0.68 0.65768
Target:  5'- gACGCUccaGCCgcgaaCGGCGCgcgucucGGGGCGCGGg -3'
miRNA:   3'- gUGCGAc--CGGa----GCUGCG-------UCUCGUGCC- -5'
23594 3' -58.9 NC_005261.1 + 14266 0.66 0.756513
Target:  5'- -gUGUcGGCUUCGGgGCuGGGGCugGGg -3'
miRNA:   3'- guGCGaCCGGAGCUgCG-UCUCGugCC- -5'
23594 3' -58.9 NC_005261.1 + 14423 0.66 0.774169
Target:  5'- gCGCGCUGucucacggaacucGgCUCGcuCGCGGGGCGCGcGg -3'
miRNA:   3'- -GUGCGAC-------------CgGAGCu-GCGUCUCGUGC-C- -5'
23594 3' -58.9 NC_005261.1 + 14814 0.67 0.69853
Target:  5'- gCACGUccgcGGCUUauaGAUGCgccgGGAGCACGGc -3'
miRNA:   3'- -GUGCGa---CCGGAg--CUGCG----UCUCGUGCC- -5'
23594 3' -58.9 NC_005261.1 + 14867 0.74 0.345938
Target:  5'- uCGCGCaguucGCCaucgCGGCGCAGAGCGCGa -3'
miRNA:   3'- -GUGCGac---CGGa---GCUGCGUCUCGUGCc -5'
23594 3' -58.9 NC_005261.1 + 14989 0.73 0.369234
Target:  5'- cCGCGCcGGCCgCGcC-CGGAGCGCGGg -3'
miRNA:   3'- -GUGCGaCCGGaGCuGcGUCUCGUGCC- -5'
23594 3' -58.9 NC_005261.1 + 15290 0.66 0.765857
Target:  5'- gCGCGCggucgcGGCCUCcggguCGuCGGAGC-CGGg -3'
miRNA:   3'- -GUGCGa-----CCGGAGcu---GC-GUCUCGuGCC- -5'
23594 3' -58.9 NC_005261.1 + 15439 0.71 0.500558
Target:  5'- gGCGCgGGCCggCGAUGgagaAGAGCACGu -3'
miRNA:   3'- gUGCGaCCGGa-GCUGCg---UCUCGUGCc -5'
23594 3' -58.9 NC_005261.1 + 16206 0.67 0.737516
Target:  5'- cCGCGUgaUGGCCUCGAgGCucGGCcagcccucgggGCGGu -3'
miRNA:   3'- -GUGCG--ACCGGAGCUgCGucUCG-----------UGCC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.