miRNA display CGI


Results 41 - 60 of 280 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23594 3' -58.9 NC_005261.1 + 51773 0.66 0.802001
Target:  5'- gGCGCUGGCCggCGuCGCccuGCugGc -3'
miRNA:   3'- gUGCGACCGGa-GCuGCGucuCGugCc -5'
23594 3' -58.9 NC_005261.1 + 1776 0.66 0.802001
Target:  5'- gCACGUUGGCgC-CG-CgGCAGAGCcgcaGCGGc -3'
miRNA:   3'- -GUGCGACCG-GaGCuG-CGUCUCG----UGCC- -5'
23594 3' -58.9 NC_005261.1 + 130599 0.66 0.800245
Target:  5'- cCGCGcCUGGCCcgucuuugccugCGccuucaacagcGCGCGGGGCGCGc -3'
miRNA:   3'- -GUGC-GACCGGa-----------GC-----------UGCGUCUCGUGCc -5'
23594 3' -58.9 NC_005261.1 + 135010 0.66 0.793167
Target:  5'- gGCGCggcgGGCC-CGcACGCGGc-CGCGGc -3'
miRNA:   3'- gUGCGa---CCGGaGC-UGCGUCucGUGCC- -5'
23594 3' -58.9 NC_005261.1 + 118983 0.66 0.793167
Target:  5'- cCGCGCUGuGCUUCuGCGuCGGGGCcuGCuGGg -3'
miRNA:   3'- -GUGCGAC-CGGAGcUGC-GUCUCG--UG-CC- -5'
23594 3' -58.9 NC_005261.1 + 82160 0.66 0.793167
Target:  5'- cCGCGCcaGCaagcgCGGCGCGGAagGCGCGGc -3'
miRNA:   3'- -GUGCGacCGga---GCUGCGUCU--CGUGCC- -5'
23594 3' -58.9 NC_005261.1 + 44310 0.66 0.793167
Target:  5'- -cCGCUGcccgcgggcGCCgcaGACGgGGGGCugGGg -3'
miRNA:   3'- guGCGAC---------CGGag-CUGCgUCUCGugCC- -5'
23594 3' -58.9 NC_005261.1 + 13941 0.66 0.793167
Target:  5'- uCGCGUUgcGGCCcagCcGCGCGGAaacGCGCGGu -3'
miRNA:   3'- -GUGCGA--CCGGa--GcUGCGUCU---CGUGCC- -5'
23594 3' -58.9 NC_005261.1 + 138029 0.66 0.793167
Target:  5'- gGCGC-GGCCcggCGGCGguG-GCgGCGGu -3'
miRNA:   3'- gUGCGaCCGGa--GCUGCguCuCG-UGCC- -5'
23594 3' -58.9 NC_005261.1 + 126076 0.66 0.793167
Target:  5'- -cCGCcGGCCUCGGCG---GGCGCGc -3'
miRNA:   3'- guGCGaCCGGAGCUGCgucUCGUGCc -5'
23594 3' -58.9 NC_005261.1 + 55480 0.66 0.793167
Target:  5'- aCACGUccGGUC-CGACGCGcGGCGCGc -3'
miRNA:   3'- -GUGCGa-CCGGaGCUGCGUcUCGUGCc -5'
23594 3' -58.9 NC_005261.1 + 34008 0.66 0.793167
Target:  5'- -cUGCUGcaucuGCCUCGACGUgaucaccGGCGCGGc -3'
miRNA:   3'- guGCGAC-----CGGAGCUGCGuc-----UCGUGCC- -5'
23594 3' -58.9 NC_005261.1 + 3926 0.66 0.793167
Target:  5'- gGCGCcGGCCUCcGgGUAGGcCAUGGg -3'
miRNA:   3'- gUGCGaCCGGAGcUgCGUCUcGUGCC- -5'
23594 3' -58.9 NC_005261.1 + 358 0.66 0.793167
Target:  5'- gGCGC-GGCCcggCGGCGguG-GCgGCGGu -3'
miRNA:   3'- gUGCGaCCGGa--GCUGCguCuCG-UGCC- -5'
23594 3' -58.9 NC_005261.1 + 63738 0.66 0.793167
Target:  5'- uGCGCaUGGCCgcggCGGCGUAG-GC-CGc -3'
miRNA:   3'- gUGCG-ACCGGa---GCUGCGUCuCGuGCc -5'
23594 3' -58.9 NC_005261.1 + 38296 0.66 0.792275
Target:  5'- -gUGCUGGCC-CGccugagcGCGCAGGGCGg-- -3'
miRNA:   3'- guGCGACCGGaGC-------UGCGUCUCGUgcc -5'
23594 3' -58.9 NC_005261.1 + 57448 0.66 0.784192
Target:  5'- cCGCGCgacGGCgUCcGCGaAGAGCACGcGg -3'
miRNA:   3'- -GUGCGa--CCGgAGcUGCgUCUCGUGC-C- -5'
23594 3' -58.9 NC_005261.1 + 136993 0.66 0.784192
Target:  5'- cCugGCaGGUCgaucgugCGGcCGgAGAGCGCGGc -3'
miRNA:   3'- -GugCGaCCGGa------GCU-GCgUCUCGUGCC- -5'
23594 3' -58.9 NC_005261.1 + 132501 0.66 0.784192
Target:  5'- aCGCGCccGaCCgCGACGCGG-GCugGGa -3'
miRNA:   3'- -GUGCGa-CcGGaGCUGCGUCuCGugCC- -5'
23594 3' -58.9 NC_005261.1 + 52229 0.66 0.784192
Target:  5'- gGCGCUgcGGCCgguacgguuUCGugGgAGGGCGCu- -3'
miRNA:   3'- gUGCGA--CCGG---------AGCugCgUCUCGUGcc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.