miRNA display CGI


Results 1 - 20 of 93 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23594 5' -55.9 NC_005261.1 + 6585 0.66 0.904226
Target:  5'- aGUUGGCGgggggaaUGGGGGAGGUCu-GGCa- -3'
miRNA:   3'- -CAGCCGCg------ACCUCUUCUAGuuCCGgg -5'
23594 5' -55.9 NC_005261.1 + 118848 0.66 0.897799
Target:  5'- -gCGGCGC-GGAGGgcGGcgCGcccgcGGCCCu -3'
miRNA:   3'- caGCCGCGaCCUCU--UCuaGUu----CCGGG- -5'
23594 5' -55.9 NC_005261.1 + 95806 0.66 0.897799
Target:  5'- -cCGGCGCcGGcGggGGcUCGcGGUCCu -3'
miRNA:   3'- caGCCGCGaCCuCuuCU-AGUuCCGGG- -5'
23594 5' -55.9 NC_005261.1 + 136675 0.66 0.897799
Target:  5'- cUCGGgGgUGGuGAAcGUCAccGGGUCCa -3'
miRNA:   3'- cAGCCgCgACCuCUUcUAGU--UCCGGG- -5'
23594 5' -55.9 NC_005261.1 + 69547 0.66 0.897799
Target:  5'- -gCGcGCGCUGGGGAcGGc---GGCCCc -3'
miRNA:   3'- caGC-CGCGACCUCUuCUaguuCCGGG- -5'
23594 5' -55.9 NC_005261.1 + 31181 0.66 0.895825
Target:  5'- -gCGGCGCUGGcGGccuacugccgccccGAGGUCGcGGCgCg -3'
miRNA:   3'- caGCCGCGACC-UC--------------UUCUAGUuCCGgG- -5'
23594 5' -55.9 NC_005261.1 + 48023 0.66 0.895825
Target:  5'- -cCGGCagaGCaGGGcGAGGAgcacgcgcgcgcggUCGGGGCCCg -3'
miRNA:   3'- caGCCG---CGaCCU-CUUCU--------------AGUUCCGGG- -5'
23594 5' -55.9 NC_005261.1 + 132625 0.66 0.891136
Target:  5'- --gGGCGCUGGcgccGAGGAcgcgggcgCGGcGGCCCu -3'
miRNA:   3'- cagCCGCGACCu---CUUCUa-------GUU-CCGGG- -5'
23594 5' -55.9 NC_005261.1 + 98697 0.66 0.891136
Target:  5'- --aGGCGCggccGGAGcuGGGGcCGGGGUCCg -3'
miRNA:   3'- cagCCGCGa---CCUC--UUCUaGUUCCGGG- -5'
23594 5' -55.9 NC_005261.1 + 120612 0.66 0.884241
Target:  5'- cUCGGCGCcgUGGGGcuccugcuGGUgGcGGCCCu -3'
miRNA:   3'- cAGCCGCG--ACCUCuu------CUAgUuCCGGG- -5'
23594 5' -55.9 NC_005261.1 + 15447 0.66 0.884241
Target:  5'- -cCGGCGaUGGAGAAGAgCAcguGGUUCu -3'
miRNA:   3'- caGCCGCgACCUCUUCUaGUu--CCGGG- -5'
23594 5' -55.9 NC_005261.1 + 33062 0.66 0.884241
Target:  5'- cUCGGCGCcGGGGAcgcGGcgCuggcGGCCg -3'
miRNA:   3'- cAGCCGCGaCCUCU---UCuaGuu--CCGGg -5'
23594 5' -55.9 NC_005261.1 + 64497 0.66 0.877119
Target:  5'- -gUGGCGCgGGu---GcUCGGGGCCCg -3'
miRNA:   3'- caGCCGCGaCCucuuCuAGUUCCGGG- -5'
23594 5' -55.9 NC_005261.1 + 131697 0.66 0.877119
Target:  5'- -gCGGCGCUGGAccgccUCGAGaGCCa -3'
miRNA:   3'- caGCCGCGACCUcuucuAGUUC-CGGg -5'
23594 5' -55.9 NC_005261.1 + 111987 0.66 0.869774
Target:  5'- --gGGCGCUGGAGuccau--GGGCCa -3'
miRNA:   3'- cagCCGCGACCUCuucuaguUCCGGg -5'
23594 5' -55.9 NC_005261.1 + 56143 0.66 0.869774
Target:  5'- --gGGCGCgGGccGAGGGUggcggcagcggCGGGGCCCg -3'
miRNA:   3'- cagCCGCGaCCu-CUUCUA-----------GUUCCGGG- -5'
23594 5' -55.9 NC_005261.1 + 5539 0.66 0.867528
Target:  5'- uUCGGCGCgcagcgagacgGGGGGcgcccgagcggcggAGAUgGGGGCgCCg -3'
miRNA:   3'- cAGCCGCGa----------CCUCU--------------UCUAgUUCCG-GG- -5'
23594 5' -55.9 NC_005261.1 + 23174 0.67 0.865263
Target:  5'- --aGGCGCgccGGGGgcGAcagcgagcgcgccgCGGGGCCCg -3'
miRNA:   3'- cagCCGCGa--CCUCuuCUa-------------GUUCCGGG- -5'
23594 5' -55.9 NC_005261.1 + 121179 0.67 0.862212
Target:  5'- cUCGGUGCacGGGGccGGggCcGGGCCCg -3'
miRNA:   3'- cAGCCGCGa-CCUCu-UCuaGuUCCGGG- -5'
23594 5' -55.9 NC_005261.1 + 87889 0.67 0.862212
Target:  5'- --aGGCGC-GGAGAGGG-CG-GGCCg -3'
miRNA:   3'- cagCCGCGaCCUCUUCUaGUuCCGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.