miRNA display CGI


Results 21 - 40 of 40 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23595 3' -57.3 NC_005261.1 + 64524 0.68 0.741524
Target:  5'- cGGCUCCU-CGUCgGGGggcaggUCCGGGACcACg -3'
miRNA:   3'- -CUGGGGAuGCAGgCCC------AGGUCUUG-UG- -5'
23595 3' -57.3 NC_005261.1 + 4962 0.68 0.731789
Target:  5'- cGCCCCcggccgcgGCGUCCucugGGGcCCGGAGgGCg -3'
miRNA:   3'- cUGGGGa-------UGCAGG----CCCaGGUCUUgUG- -5'
23595 3' -57.3 NC_005261.1 + 55956 0.68 0.731789
Target:  5'- -uCCCCgGCG-CCGGGUCUcccgcGAGCGCc -3'
miRNA:   3'- cuGGGGaUGCaGGCCCAGGu----CUUGUG- -5'
23595 3' -57.3 NC_005261.1 + 118358 0.69 0.702107
Target:  5'- cGGCCUCU-CGgCCGGGcgCUGGGGCGCg -3'
miRNA:   3'- -CUGGGGAuGCaGGCCCa-GGUCUUGUG- -5'
23595 3' -57.3 NC_005261.1 + 94721 0.69 0.702107
Target:  5'- cGCCgCUACcUCCGGGgCgGGGACACc -3'
miRNA:   3'- cUGGgGAUGcAGGCCCaGgUCUUGUG- -5'
23595 3' -57.3 NC_005261.1 + 72139 0.69 0.690073
Target:  5'- aGCCCCgggugcgacugcACGUCCGGGgugUCCGGGAUcccgGCg -3'
miRNA:   3'- cUGGGGa-----------UGCAGGCCC---AGGUCUUG----UG- -5'
23595 3' -57.3 NC_005261.1 + 88156 0.69 0.682011
Target:  5'- cGCCCCggccGCGcagCCGGG-CCGGGGCGa -3'
miRNA:   3'- cUGGGGa---UGCa--GGCCCaGGUCUUGUg -5'
23595 3' -57.3 NC_005261.1 + 98431 0.69 0.682011
Target:  5'- -uCCCCUGCGgacCCGGG-CCGGuaggcGGCGCc -3'
miRNA:   3'- cuGGGGAUGCa--GGCCCaGGUC-----UUGUG- -5'
23595 3' -57.3 NC_005261.1 + 52423 0.69 0.661752
Target:  5'- -uCCUCgaagGCGUCCGcGUCCAGGGcCACg -3'
miRNA:   3'- cuGGGGa---UGCAGGCcCAGGUCUU-GUG- -5'
23595 3' -57.3 NC_005261.1 + 53250 0.7 0.641399
Target:  5'- cGCCCCgcGCGUCCcGGUCgCAGAccaGCAUg -3'
miRNA:   3'- cUGGGGa-UGCAGGcCCAG-GUCU---UGUG- -5'
23595 3' -57.3 NC_005261.1 + 36910 0.7 0.600667
Target:  5'- cGACCCC-GCG-CUGGG-CCGGGACGu -3'
miRNA:   3'- -CUGGGGaUGCaGGCCCaGGUCUUGUg -5'
23595 3' -57.3 NC_005261.1 + 33272 0.71 0.560299
Target:  5'- cGGCCCCcgucccCGUCCcGGUCCGuGGGCACc -3'
miRNA:   3'- -CUGGGGau----GCAGGcCCAGGU-CUUGUG- -5'
23595 3' -57.3 NC_005261.1 + 97491 0.71 0.550314
Target:  5'- gGGCCCUUGgGggcgCCGGGgccgCCGGAACGu -3'
miRNA:   3'- -CUGGGGAUgCa---GGCCCa---GGUCUUGUg -5'
23595 3' -57.3 NC_005261.1 + 30760 0.71 0.540386
Target:  5'- cGGgCCCUA-GUCCGGG-CCGGAGCcCg -3'
miRNA:   3'- -CUgGGGAUgCAGGCCCaGGUCUUGuG- -5'
23595 3' -57.3 NC_005261.1 + 106537 0.72 0.530518
Target:  5'- cGCCuCCUcggcggcggccGCGUCCGGG-CCGGcGCGCg -3'
miRNA:   3'- cUGG-GGA-----------UGCAGGCCCaGGUCuUGUG- -5'
23595 3' -57.3 NC_005261.1 + 102081 0.72 0.482274
Target:  5'- uGGCCC--ACGUCCGcGGUCgGGAACAg -3'
miRNA:   3'- -CUGGGgaUGCAGGC-CCAGgUCUUGUg -5'
23595 3' -57.3 NC_005261.1 + 77754 0.73 0.472876
Target:  5'- aGCCCCUACGcagCCGGGgcggCgGGGACGa -3'
miRNA:   3'- cUGGGGAUGCa--GGCCCa---GgUCUUGUg -5'
23595 3' -57.3 NC_005261.1 + 72778 0.73 0.454364
Target:  5'- cGGCCgCgcacGCGUCCGGGgCCGcGGACACg -3'
miRNA:   3'- -CUGGgGa---UGCAGGCCCaGGU-CUUGUG- -5'
23595 3' -57.3 NC_005261.1 + 118907 0.74 0.3837
Target:  5'- ---gCCUGCGUCUGGGUCCGGcgccgcgGGCGCg -3'
miRNA:   3'- cuggGGAUGCAGGCCCAGGUC-------UUGUG- -5'
23595 3' -57.3 NC_005261.1 + 95321 1.1 0.001702
Target:  5'- cGACCCCUACGUCCGGGUCCAGAACACg -3'
miRNA:   3'- -CUGGGGAUGCAGGCCCAGGUCUUGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.