miRNA display CGI


Results 1 - 20 of 66 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23596 3' -50.8 NC_005261.1 + 86008 0.65 0.99526
Target:  5'- gGCGUCGUgcgccagcagccgcUGCUGGuccagcucUGCGAGCAc -3'
miRNA:   3'- -CGCAGCA--------------GCGGCCuuuu----ACGCUUGUc -5'
23596 3' -50.8 NC_005261.1 + 81515 0.66 0.994728
Target:  5'- cGCGcCGcCGCCGGcgccagGCGcuGCAGg -3'
miRNA:   3'- -CGCaGCaGCGGCCuuuua-CGCu-UGUC- -5'
23596 3' -50.8 NC_005261.1 + 137000 0.66 0.994728
Target:  5'- -gGUCGaUCgugcgGCCGGAGAGcGCGGccaGCAGa -3'
miRNA:   3'- cgCAGC-AG-----CGGCCUUUUaCGCU---UGUC- -5'
23596 3' -50.8 NC_005261.1 + 13847 0.66 0.994568
Target:  5'- uGCGucuccUCGUCGCCGGcgucgccgGCGGcccggucguACAGg -3'
miRNA:   3'- -CGC-----AGCAGCGGCCuuuua---CGCU---------UGUC- -5'
23596 3' -50.8 NC_005261.1 + 74294 0.66 0.993885
Target:  5'- gGCgGUCGcCGCCGGGcagcAGAcGCGAGacCGGg -3'
miRNA:   3'- -CG-CAGCaGCGGCCU----UUUaCGCUU--GUC- -5'
23596 3' -50.8 NC_005261.1 + 128144 0.66 0.993885
Target:  5'- gGCGaCgGUCGCCGGGGcc-GCGGGCc- -3'
miRNA:   3'- -CGCaG-CAGCGGCCUUuuaCGCUUGuc -5'
23596 3' -50.8 NC_005261.1 + 54754 0.66 0.993885
Target:  5'- cGCGcUCGaUCGCCGcc-AGUGCG-GCGGg -3'
miRNA:   3'- -CGC-AGC-AGCGGCcuuUUACGCuUGUC- -5'
23596 3' -50.8 NC_005261.1 + 72966 0.66 0.993885
Target:  5'- cGCGccCGcCGCCGcGggGGUccGCGAGCGc -3'
miRNA:   3'- -CGCa-GCaGCGGC-CuuUUA--CGCUUGUc -5'
23596 3' -50.8 NC_005261.1 + 98142 0.66 0.993885
Target:  5'- gGCGgcCGUCGgCGGcAAGgccGCGGGCGGc -3'
miRNA:   3'- -CGCa-GCAGCgGCCuUUUa--CGCUUGUC- -5'
23596 3' -50.8 NC_005261.1 + 58287 0.66 0.993885
Target:  5'- gGgGcCGgcgCGCCGGggGGcGCGGGgAGg -3'
miRNA:   3'- -CgCaGCa--GCGGCCuuUUaCGCUUgUC- -5'
23596 3' -50.8 NC_005261.1 + 62437 0.66 0.993795
Target:  5'- cGCGagccgGUCGCCGGGccccagcAGcgGCGGaaGCAGg -3'
miRNA:   3'- -CGCag---CAGCGGCCU-------UUuaCGCU--UGUC- -5'
23596 3' -50.8 NC_005261.1 + 103480 0.66 0.993329
Target:  5'- gGCGUccagcuggcgcaagaCGUCGUCGGcgcc-GCGGACGGc -3'
miRNA:   3'- -CGCA---------------GCAGCGGCCuuuuaCGCUUGUC- -5'
23596 3' -50.8 NC_005261.1 + 1100 0.66 0.992937
Target:  5'- gGC-UCGUCGUCcGAGGAcGCGGACGa -3'
miRNA:   3'- -CGcAGCAGCGGcCUUUUaCGCUUGUc -5'
23596 3' -50.8 NC_005261.1 + 125459 0.66 0.992937
Target:  5'- aGCGUCuaagggCGCCGaGAAAGccGCGGGCGc -3'
miRNA:   3'- -CGCAGca----GCGGC-CUUUUa-CGCUUGUc -5'
23596 3' -50.8 NC_005261.1 + 78854 0.66 0.992937
Target:  5'- gGCGccCGcCGCCGGAGc--GCGAGCc- -3'
miRNA:   3'- -CGCa-GCaGCGGCCUUuuaCGCUUGuc -5'
23596 3' -50.8 NC_005261.1 + 97079 0.66 0.992937
Target:  5'- cGCGUCGgaggCGCCGGcuGGgccGgGGGCGc -3'
miRNA:   3'- -CGCAGCa---GCGGCCuuUUa--CgCUUGUc -5'
23596 3' -50.8 NC_005261.1 + 104185 0.66 0.992937
Target:  5'- cGCGg-GUCGUCGGGcggGAcgGCGucCAGg -3'
miRNA:   3'- -CGCagCAGCGGCCU---UUuaCGCuuGUC- -5'
23596 3' -50.8 NC_005261.1 + 71959 0.66 0.991874
Target:  5'- gGCGUCGgCGCgGGGcgcgGAGcGCGcGGCAGg -3'
miRNA:   3'- -CGCAGCaGCGgCCU----UUUaCGC-UUGUC- -5'
23596 3' -50.8 NC_005261.1 + 123181 0.66 0.991874
Target:  5'- gGCGUgGUgGCUGG----UGUGGGCGGa -3'
miRNA:   3'- -CGCAgCAgCGGCCuuuuACGCUUGUC- -5'
23596 3' -50.8 NC_005261.1 + 19027 0.66 0.991874
Target:  5'- aGCGUCGcggggcaGCCGGAGAGccGCcaGGCAGg -3'
miRNA:   3'- -CGCAGCag-----CGGCCUUUUa-CGc-UUGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.