miRNA display CGI


Results 1 - 20 of 66 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23596 3' -50.8 NC_005261.1 + 1100 0.66 0.992937
Target:  5'- gGC-UCGUCGUCcGAGGAcGCGGACGa -3'
miRNA:   3'- -CGcAGCAGCGGcCUUUUaCGCUUGUc -5'
23596 3' -50.8 NC_005261.1 + 11296 0.68 0.980493
Target:  5'- cGCG-CGUCGCagGGGAGGUGgGGAgGa -3'
miRNA:   3'- -CGCaGCAGCGg-CCUUUUACgCUUgUc -5'
23596 3' -50.8 NC_005261.1 + 13073 0.69 0.95626
Target:  5'- gGCG-CGUcCGCCGGcccgucgGCGGGCGGc -3'
miRNA:   3'- -CGCaGCA-GCGGCCuuuua--CGCUUGUC- -5'
23596 3' -50.8 NC_005261.1 + 13433 0.68 0.973009
Target:  5'- cGCG-CGUCGaCCGGG---UGCaGGCAGg -3'
miRNA:   3'- -CGCaGCAGC-GGCCUuuuACGcUUGUC- -5'
23596 3' -50.8 NC_005261.1 + 13847 0.66 0.994568
Target:  5'- uGCGucuccUCGUCGCCGGcgucgccgGCGGcccggucguACAGg -3'
miRNA:   3'- -CGC-----AGCAGCGGCCuuuua---CGCU---------UGUC- -5'
23596 3' -50.8 NC_005261.1 + 15542 0.68 0.980493
Target:  5'- gGCGUCGUucgcgaCGCgCGGgcAGgagGCGAACGc -3'
miRNA:   3'- -CGCAGCA------GCG-GCCuuUUa--CGCUUGUc -5'
23596 3' -50.8 NC_005261.1 + 15702 0.7 0.938588
Target:  5'- aGCGUugCGUCgGCUGGGugGAcgGCGAACGc -3'
miRNA:   3'- -CGCA--GCAG-CGGCCU--UUuaCGCUUGUc -5'
23596 3' -50.8 NC_005261.1 + 16399 0.83 0.359007
Target:  5'- uCGUCGUCGCCGGGcgGUGCGGGagAGg -3'
miRNA:   3'- cGCAGCAGCGGCCUuuUACGCUUg-UC- -5'
23596 3' -50.8 NC_005261.1 + 19027 0.66 0.991874
Target:  5'- aGCGUCGcggggcaGCCGGAGAGccGCcaGGCAGg -3'
miRNA:   3'- -CGCAGCag-----CGGCCUUUUa-CGc-UUGUC- -5'
23596 3' -50.8 NC_005261.1 + 19093 0.67 0.987915
Target:  5'- uGCGUgG-CGuuGGAAGuUGCGGGuCAGc -3'
miRNA:   3'- -CGCAgCaGCggCCUUUuACGCUU-GUC- -5'
23596 3' -50.8 NC_005261.1 + 19541 0.66 0.99069
Target:  5'- cGCGUCaccgccagCGCCGuGggGAgcgccaGCGGGCGGu -3'
miRNA:   3'- -CGCAGca------GCGGC-CuuUUa-----CGCUUGUC- -5'
23596 3' -50.8 NC_005261.1 + 32914 0.71 0.922697
Target:  5'- gGCG-CG-CGUgGGggGcgGCGGGCGGg -3'
miRNA:   3'- -CGCaGCaGCGgCCuuUuaCGCUUGUC- -5'
23596 3' -50.8 NC_005261.1 + 39786 0.67 0.989373
Target:  5'- ---aCGUCGCCGGggG--GCGGcGCGGc -3'
miRNA:   3'- cgcaGCAGCGGCCuuUuaCGCU-UGUC- -5'
23596 3' -50.8 NC_005261.1 + 39916 0.69 0.958951
Target:  5'- cGCGgcCGUCGCCacccacccgucgaaGGGGAccGCGAACAc -3'
miRNA:   3'- -CGCa-GCAGCGG--------------CCUUUuaCGCUUGUc -5'
23596 3' -50.8 NC_005261.1 + 40226 0.75 0.753743
Target:  5'- aGCGUCGUCGucucuggcCCGGggGccGUGAGCGc -3'
miRNA:   3'- -CGCAGCAGC--------GGCCuuUuaCGCUUGUc -5'
23596 3' -50.8 NC_005261.1 + 43451 0.71 0.897965
Target:  5'- gGCGccuggaCGUCGCCGGGcGGGUGCuGGCGGa -3'
miRNA:   3'- -CGCa-----GCAGCGGCCU-UUUACGcUUGUC- -5'
23596 3' -50.8 NC_005261.1 + 45633 0.66 0.99069
Target:  5'- cGCGgCGggcccgCGCCGGAGcAGUGCccAGCGGg -3'
miRNA:   3'- -CGCaGCa-----GCGGCCUU-UUACGc-UUGUC- -5'
23596 3' -50.8 NC_005261.1 + 47706 0.73 0.828467
Target:  5'- cGCGUCGgcggCGUCGGggGccuccucgGCGGACAc -3'
miRNA:   3'- -CGCAGCa---GCGGCCuuUua------CGCUUGUc -5'
23596 3' -50.8 NC_005261.1 + 49453 0.67 0.982605
Target:  5'- cGCG-CG-CGCCGcGGAAGgcggGCGcGCAGg -3'
miRNA:   3'- -CGCaGCaGCGGC-CUUUUa---CGCuUGUC- -5'
23596 3' -50.8 NC_005261.1 + 52965 0.66 0.99069
Target:  5'- aGCGcCG-CGCCGGu-GcgGCGccGGCAGg -3'
miRNA:   3'- -CGCaGCaGCGGCCuuUuaCGC--UUGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.