miRNA display CGI


Results 1 - 20 of 275 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23596 5' -60.2 NC_005261.1 + 13087 0.65 0.729233
Target:  5'- -cCCGUCgGCgggcggcgggcucGGCUCGggggcgucggcggcCGCGgGGCGCg -3'
miRNA:   3'- caGGCAGaCG-------------UCGAGC--------------GUGCgCCGCG- -5'
23596 5' -60.2 NC_005261.1 + 67108 0.66 0.727302
Target:  5'- gGUgCGg--GCGGCgcgCGCAgugcggcggcccgacCGCGGCGCc -3'
miRNA:   3'- -CAgGCagaCGUCGa--GCGU---------------GCGCCGCG- -5'
23596 5' -60.2 NC_005261.1 + 1829 0.66 0.723431
Target:  5'- --gCGUaaGCGGCcucggCGCGCGCgaaGGCGCc -3'
miRNA:   3'- cagGCAgaCGUCGa----GCGUGCG---CCGCG- -5'
23596 5' -60.2 NC_005261.1 + 21168 0.66 0.723431
Target:  5'- -gCCGagcagagaUGCAGC-CGCugGCGCGaGCGCg -3'
miRNA:   3'- caGGCag------ACGUCGaGCG--UGCGC-CGCG- -5'
23596 5' -60.2 NC_005261.1 + 29752 0.66 0.723431
Target:  5'- uUCCucCUGCAGa--GCcUGCGGCGCg -3'
miRNA:   3'- cAGGcaGACGUCgagCGuGCGCCGCG- -5'
23596 5' -60.2 NC_005261.1 + 48319 0.66 0.723431
Target:  5'- --gCGUCggGCccgGGCUcgggggCGCGCGCGGCGa -3'
miRNA:   3'- cagGCAGa-CG---UCGA------GCGUGCGCCGCg -5'
23596 5' -60.2 NC_005261.1 + 112159 0.66 0.723431
Target:  5'- -gCCGaUCaUGCucuucgccGGC-CGCGCGCGGgGCu -3'
miRNA:   3'- caGGC-AG-ACG--------UCGaGCGUGCGCCgCG- -5'
23596 5' -60.2 NC_005261.1 + 110888 0.66 0.723431
Target:  5'- -cCCGUCUcGCGGCUgggcgacugCGaCGCGaCGGUGUu -3'
miRNA:   3'- caGGCAGA-CGUCGA---------GC-GUGC-GCCGCG- -5'
23596 5' -60.2 NC_005261.1 + 118200 0.66 0.723431
Target:  5'- -cCCGcgcCUGCcGCgcuGCGCGgGGCGCu -3'
miRNA:   3'- caGGCa--GACGuCGag-CGUGCgCCGCG- -5'
23596 5' -60.2 NC_005261.1 + 133162 0.66 0.723431
Target:  5'- -gCCGUCgGCGucGC-CGCcgacaacCGCGGCGCc -3'
miRNA:   3'- caGGCAGaCGU--CGaGCGu------GCGCCGCG- -5'
23596 5' -60.2 NC_005261.1 + 137055 0.66 0.723431
Target:  5'- -aCCGUCgGCAggcgcggaggcGCggGCACccaugGCGGCGCa -3'
miRNA:   3'- caGGCAGaCGU-----------CGagCGUG-----CGCCGCG- -5'
23596 5' -60.2 NC_005261.1 + 23309 0.66 0.723431
Target:  5'- -cCCGUaugGCcgagcagaaagaAGCcgacgaGCGCGCGGCGCa -3'
miRNA:   3'- caGGCAga-CG------------UCGag----CGUGCGCCGCG- -5'
23596 5' -60.2 NC_005261.1 + 12788 0.66 0.713702
Target:  5'- -cUCGUCgGCgAGCUCGU-CGuCGGCGUc -3'
miRNA:   3'- caGGCAGaCG-UCGAGCGuGC-GCCGCG- -5'
23596 5' -60.2 NC_005261.1 + 64838 0.66 0.713702
Target:  5'- gGUCCGcgcgCUGCAGCgccaugaccgcgUCGCGucccagaucaGCGGCGg -3'
miRNA:   3'- -CAGGCa---GACGUCG------------AGCGUg---------CGCCGCg -5'
23596 5' -60.2 NC_005261.1 + 71056 0.66 0.713702
Target:  5'- -gCCGUggGcCAGC-CGcCGCGCGGCGg -3'
miRNA:   3'- caGGCAgaC-GUCGaGC-GUGCGCCGCg -5'
23596 5' -60.2 NC_005261.1 + 81717 0.66 0.713702
Target:  5'- gGUCCGcgCgcaGCAGCg-GCACGCGucCGCa -3'
miRNA:   3'- -CAGGCa-Ga--CGUCGagCGUGCGCc-GCG- -5'
23596 5' -60.2 NC_005261.1 + 93881 0.66 0.713702
Target:  5'- uUCCaGcUCaGCAGCgcggUCGCcagcgacugcggGCGCGGCGCc -3'
miRNA:   3'- cAGG-C-AGaCGUCG----AGCG------------UGCGCCGCG- -5'
23596 5' -60.2 NC_005261.1 + 59437 0.66 0.713702
Target:  5'- -cCCGgcaggCgccgGCAGCagCGCGgcCGCGGCGUc -3'
miRNA:   3'- caGGCa----Ga---CGUCGa-GCGU--GCGCCGCG- -5'
23596 5' -60.2 NC_005261.1 + 104233 0.66 0.713702
Target:  5'- -aCCGUgccCUcCAGCgccagaauuUCGCGCGCGaGCGCc -3'
miRNA:   3'- caGGCA---GAcGUCG---------AGCGUGCGC-CGCG- -5'
23596 5' -60.2 NC_005261.1 + 136755 0.66 0.71077
Target:  5'- -gCCGUCggugGUgaggAGCUCGUGCagcgagucggcgagGCGGUGCa -3'
miRNA:   3'- caGGCAGa---CG----UCGAGCGUG--------------CGCCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.