miRNA display CGI


Results 61 - 80 of 275 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23596 5' -60.2 NC_005261.1 + 99534 0.66 0.694054
Target:  5'- -aCCGUCgaggGC-GCgUC-CAgGCGGCGCg -3'
miRNA:   3'- caGGCAGa---CGuCG-AGcGUgCGCCGCG- -5'
23596 5' -60.2 NC_005261.1 + 81164 0.66 0.698001
Target:  5'- cUCCGUguagUUGCgcccgAGCUCGUacucggggcacggccGCGCGGgCGCg -3'
miRNA:   3'- cAGGCA----GACG-----UCGAGCG---------------UGCGCC-GCG- -5'
23596 5' -60.2 NC_005261.1 + 40652 0.66 0.703907
Target:  5'- cGUCCagcGUCgacaGCAGCUcCGCgACGCcgucggggagccGGCGCc -3'
miRNA:   3'- -CAGG---CAGa---CGUCGA-GCG-UGCG------------CCGCG- -5'
23596 5' -60.2 NC_005261.1 + 50991 0.66 0.703907
Target:  5'- -gCCGaCgGCGGCgCGUggGCGCGGCGg -3'
miRNA:   3'- caGGCaGaCGUCGaGCG--UGCGCCGCg -5'
23596 5' -60.2 NC_005261.1 + 1908 0.66 0.703907
Target:  5'- -gCCG-CUcaGGC-CaGCGCGCGGCGCa -3'
miRNA:   3'- caGGCaGAcgUCGaG-CGUGCGCCGCG- -5'
23596 5' -60.2 NC_005261.1 + 29228 0.66 0.703907
Target:  5'- -cCCG-C-GCAGgCUaCGC-CGCGGCGCc -3'
miRNA:   3'- caGGCaGaCGUC-GA-GCGuGCGCCGCG- -5'
23596 5' -60.2 NC_005261.1 + 48801 0.66 0.703907
Target:  5'- cUCCGUga--GGC-CGUGCGCGGCGUc -3'
miRNA:   3'- cAGGCAgacgUCGaGCGUGCGCCGCG- -5'
23596 5' -60.2 NC_005261.1 + 136755 0.66 0.71077
Target:  5'- -gCCGUCggugGUgaggAGCUCGUGCagcgagucggcgagGCGGUGCa -3'
miRNA:   3'- caGGCAGa---CG----UCGAGCGUG--------------CGCCGCG- -5'
23596 5' -60.2 NC_005261.1 + 118368 0.66 0.709792
Target:  5'- -gCCGggcgCUGgGGCgcgcggcccgaggCGCugGCGGcCGCg -3'
miRNA:   3'- caGGCa---GACgUCGa------------GCGugCGCC-GCG- -5'
23596 5' -60.2 NC_005261.1 + 40760 0.66 0.707833
Target:  5'- uGUCgGUCUGCAGUgccauggagaccaGCcCGCcGCGCa -3'
miRNA:   3'- -CAGgCAGACGUCGag-----------CGuGCGcCGCG- -5'
23596 5' -60.2 NC_005261.1 + 67953 0.66 0.703907
Target:  5'- -cCCGcUCgcGCGGC-CGC-CGCGGCGa -3'
miRNA:   3'- caGGC-AGa-CGUCGaGCGuGCGCCGCg -5'
23596 5' -60.2 NC_005261.1 + 67852 0.66 0.703907
Target:  5'- cUCCGggccgaGCuGCUCGCggcaacucccGgGCGGCGCg -3'
miRNA:   3'- cAGGCaga---CGuCGAGCG----------UgCGCCGCG- -5'
23596 5' -60.2 NC_005261.1 + 50850 0.66 0.703907
Target:  5'- --gCGcCUGUGGCUCGCccAgGuCGGCGCc -3'
miRNA:   3'- cagGCaGACGUCGAGCG--UgC-GCCGCG- -5'
23596 5' -60.2 NC_005261.1 + 49251 0.66 0.703907
Target:  5'- -gCCGcCgcgGCGGCgucggcgCGCACGUccgcgaggaaGGCGCa -3'
miRNA:   3'- caGGCaGa--CGUCGa------GCGUGCG----------CCGCG- -5'
23596 5' -60.2 NC_005261.1 + 127837 0.67 0.654225
Target:  5'- -gCCG-CgaGCAGCggacggggCGguCGCGGCGCc -3'
miRNA:   3'- caGGCaGa-CGUCGa-------GCguGCGCCGCG- -5'
23596 5' -60.2 NC_005261.1 + 75824 0.67 0.654225
Target:  5'- -cCCGgc-GCGGCcgCGCccggggaggggcGCGCGGCGCc -3'
miRNA:   3'- caGGCagaCGUCGa-GCG------------UGCGCCGCG- -5'
23596 5' -60.2 NC_005261.1 + 127897 0.67 0.658229
Target:  5'- -cCCGUCggGCccgggccugggcuugGGCUCGgGCccgcucgauGCGGCGCa -3'
miRNA:   3'- caGGCAGa-CG---------------UCGAGCgUG---------CGCCGCG- -5'
23596 5' -60.2 NC_005261.1 + 118778 0.67 0.664228
Target:  5'- -gCCGacgCUGCAGacgGCGCGCugauGGCGCa -3'
miRNA:   3'- caGGCa--GACGUCgagCGUGCG----CCGCG- -5'
23596 5' -60.2 NC_005261.1 + 31486 0.67 0.664228
Target:  5'- -gCCGgugCgcgGCGGgcuCUCGCAccugcuCGCGGCGCu -3'
miRNA:   3'- caGGCa--Ga--CGUC---GAGCGU------GCGCCGCG- -5'
23596 5' -60.2 NC_005261.1 + 109850 0.67 0.654225
Target:  5'- -gCCGUUggugGCGGCUC-CugGgGGCaGCg -3'
miRNA:   3'- caGGCAGa---CGUCGAGcGugCgCCG-CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.