Results 81 - 100 of 275 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23596 | 5' | -60.2 | NC_005261.1 | + | 91169 | 0.67 | 0.634178 |
Target: 5'- -cCCGggcgGCAGCucccgccgggcuUCGCGCGCuucGGCGCc -3' miRNA: 3'- caGGCaga-CGUCG------------AGCGUGCG---CCGCG- -5' |
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23596 | 5' | -60.2 | NC_005261.1 | + | 90875 | 0.67 | 0.634178 |
Target: 5'- -gCCGUCUGCgcgcugggcgacGGCaUgGCGCggcaggucucgGCGGCGCu -3' miRNA: 3'- caGGCAGACG------------UCG-AgCGUG-----------CGCCGCG- -5' |
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23596 | 5' | -60.2 | NC_005261.1 | + | 73125 | 0.67 | 0.634178 |
Target: 5'- cGUCCGcgCgguccccggGCcgGGCUCGCGCcgccagGCGGCGUu -3' miRNA: 3'- -CAGGCa-Ga--------CG--UCGAGCGUG------CGCCGCG- -5' |
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23596 | 5' | -60.2 | NC_005261.1 | + | 39887 | 0.67 | 0.634178 |
Target: 5'- -gCCGcgcgcgcggcUgUGCAGCUggCGCGCGCGGcCGUc -3' miRNA: 3'- caGGC----------AgACGUCGA--GCGUGCGCC-GCG- -5' |
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23596 | 5' | -60.2 | NC_005261.1 | + | 20951 | 0.67 | 0.634178 |
Target: 5'- cUCCGgCUGUuuacgAGgUCGUggaccgcgGCGCGGCGCc -3' miRNA: 3'- cAGGCaGACG-----UCgAGCG--------UGCGCCGCG- -5' |
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23596 | 5' | -60.2 | NC_005261.1 | + | 108005 | 0.67 | 0.634178 |
Target: 5'- -gCCGUCggGCAGCcccaGCA-GCGGCaGCa -3' miRNA: 3'- caGGCAGa-CGUCGag--CGUgCGCCG-CG- -5' |
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23596 | 5' | -60.2 | NC_005261.1 | + | 50621 | 0.67 | 0.644206 |
Target: 5'- -cCCGaUUGguGCUC-CACGCGG-GCg -3' miRNA: 3'- caGGCaGACguCGAGcGUGCGCCgCG- -5' |
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23596 | 5' | -60.2 | NC_005261.1 | + | 95630 | 0.67 | 0.644206 |
Target: 5'- gGUCCaggaGCGGCUgggcgagcgCGaCGCGCGGCGCc -3' miRNA: 3'- -CAGGcagaCGUCGA---------GC-GUGCGCCGCG- -5' |
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23596 | 5' | -60.2 | NC_005261.1 | + | 125407 | 0.67 | 0.644206 |
Target: 5'- uUCCGga-GCGGC--GCGgGCGGCGCu -3' miRNA: 3'- cAGGCagaCGUCGagCGUgCGCCGCG- -5' |
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23596 | 5' | -60.2 | NC_005261.1 | + | 31486 | 0.67 | 0.664228 |
Target: 5'- -gCCGgugCgcgGCGGgcuCUCGCAccugcuCGCGGCGCu -3' miRNA: 3'- caGGCa--Ga--CGUC---GAGCGU------GCGCCGCG- -5' |
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23596 | 5' | -60.2 | NC_005261.1 | + | 118778 | 0.67 | 0.664228 |
Target: 5'- -gCCGacgCUGCAGacgGCGCGCugauGGCGCa -3' miRNA: 3'- caGGCa--GACGUCgagCGUGCG----CCGCG- -5' |
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23596 | 5' | -60.2 | NC_005261.1 | + | 127897 | 0.67 | 0.658229 |
Target: 5'- -cCCGUCggGCccgggccugggcuugGGCUCGgGCccgcucgauGCGGCGCa -3' miRNA: 3'- caGGCAGa-CG---------------UCGAGCgUG---------CGCCGCG- -5' |
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23596 | 5' | -60.2 | NC_005261.1 | + | 75824 | 0.67 | 0.654225 |
Target: 5'- -cCCGgc-GCGGCcgCGCccggggaggggcGCGCGGCGCc -3' miRNA: 3'- caGGCagaCGUCGa-GCG------------UGCGCCGCG- -5' |
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23596 | 5' | -60.2 | NC_005261.1 | + | 127837 | 0.67 | 0.654225 |
Target: 5'- -gCCG-CgaGCAGCggacggggCGguCGCGGCGCc -3' miRNA: 3'- caGGCaGa-CGUCGa-------GCguGCGCCGCG- -5' |
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23596 | 5' | -60.2 | NC_005261.1 | + | 109850 | 0.67 | 0.654225 |
Target: 5'- -gCCGUUggugGCGGCUC-CugGgGGCaGCg -3' miRNA: 3'- caGGCAGa---CGUCGAGcGugCgCCG-CG- -5' |
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23596 | 5' | -60.2 | NC_005261.1 | + | 100102 | 0.67 | 0.654225 |
Target: 5'- -gCCG-CUGCcGC-CGCccaGCGGCGCc -3' miRNA: 3'- caGGCaGACGuCGaGCGug-CGCCGCG- -5' |
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23596 | 5' | -60.2 | NC_005261.1 | + | 98574 | 0.67 | 0.654225 |
Target: 5'- -gCCGUCcuccGCgGGCUCGgGCgaguagGCGGCGCc -3' miRNA: 3'- caGGCAGa---CG-UCGAGCgUG------CGCCGCG- -5' |
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23596 | 5' | -60.2 | NC_005261.1 | + | 54367 | 0.67 | 0.654225 |
Target: 5'- gGUCCG-CggGCAGCg-GCuCGgGGCGCc -3' miRNA: 3'- -CAGGCaGa-CGUCGagCGuGCgCCGCG- -5' |
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23596 | 5' | -60.2 | NC_005261.1 | + | 45392 | 0.67 | 0.654225 |
Target: 5'- -cCUGUUcgUGCAGCugUCGUGCcugcuGCGGCGCc -3' miRNA: 3'- caGGCAG--ACGUCG--AGCGUG-----CGCCGCG- -5' |
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23596 | 5' | -60.2 | NC_005261.1 | + | 4149 | 0.67 | 0.654225 |
Target: 5'- -gCCG-CUGCAGCagGCGCGCcaGCuGCa -3' miRNA: 3'- caGGCaGACGUCGagCGUGCGc-CG-CG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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