miRNA display CGI


Results 101 - 120 of 275 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23596 5' -60.2 NC_005261.1 + 98574 0.67 0.654225
Target:  5'- -gCCGUCcuccGCgGGCUCGgGCgaguagGCGGCGCc -3'
miRNA:   3'- caGGCAGa---CG-UCGAGCgUG------CGCCGCG- -5'
23596 5' -60.2 NC_005261.1 + 100102 0.67 0.654225
Target:  5'- -gCCG-CUGCcGC-CGCccaGCGGCGCc -3'
miRNA:   3'- caGGCaGACGuCGaGCGug-CGCCGCG- -5'
23596 5' -60.2 NC_005261.1 + 109850 0.67 0.654225
Target:  5'- -gCCGUUggugGCGGCUC-CugGgGGCaGCg -3'
miRNA:   3'- caGGCAGa---CGUCGAGcGugCgCCG-CG- -5'
23596 5' -60.2 NC_005261.1 + 127837 0.67 0.654225
Target:  5'- -gCCG-CgaGCAGCggacggggCGguCGCGGCGCc -3'
miRNA:   3'- caGGCaGa-CGUCGa-------GCguGCGCCGCG- -5'
23596 5' -60.2 NC_005261.1 + 75824 0.67 0.654225
Target:  5'- -cCCGgc-GCGGCcgCGCccggggaggggcGCGCGGCGCc -3'
miRNA:   3'- caGGCagaCGUCGa-GCG------------UGCGCCGCG- -5'
23596 5' -60.2 NC_005261.1 + 127897 0.67 0.658229
Target:  5'- -cCCGUCggGCccgggccugggcuugGGCUCGgGCccgcucgauGCGGCGCa -3'
miRNA:   3'- caGGCAGa-CG---------------UCGAGCgUG---------CGCCGCG- -5'
23596 5' -60.2 NC_005261.1 + 118778 0.67 0.664228
Target:  5'- -gCCGacgCUGCAGacgGCGCGCugauGGCGCa -3'
miRNA:   3'- caGGCa--GACGUCgagCGUGCG----CCGCG- -5'
23596 5' -60.2 NC_005261.1 + 31486 0.67 0.664228
Target:  5'- -gCCGgugCgcgGCGGgcuCUCGCAccugcuCGCGGCGCu -3'
miRNA:   3'- caGGCa--Ga--CGUC---GAGCGU------GCGCCGCG- -5'
23596 5' -60.2 NC_005261.1 + 45392 0.67 0.654225
Target:  5'- -cCUGUUcgUGCAGCugUCGUGCcugcuGCGGCGCc -3'
miRNA:   3'- caGGCAG--ACGUCG--AGCGUG-----CGCCGCG- -5'
23596 5' -60.2 NC_005261.1 + 4149 0.67 0.654225
Target:  5'- -gCCG-CUGCAGCagGCGCGCcaGCuGCa -3'
miRNA:   3'- caGGCaGACGUCGagCGUGCGc-CG-CG- -5'
23596 5' -60.2 NC_005261.1 + 125407 0.67 0.644206
Target:  5'- uUCCGga-GCGGC--GCGgGCGGCGCu -3'
miRNA:   3'- cAGGCagaCGUCGagCGUgCGCCGCG- -5'
23596 5' -60.2 NC_005261.1 + 91169 0.67 0.634178
Target:  5'- -cCCGggcgGCAGCucccgccgggcuUCGCGCGCuucGGCGCc -3'
miRNA:   3'- caGGCaga-CGUCG------------AGCGUGCG---CCGCG- -5'
23596 5' -60.2 NC_005261.1 + 99214 0.67 0.634178
Target:  5'- gGUCCGaggacaCcGCGGCagGCGCGuCGGCGUc -3'
miRNA:   3'- -CAGGCa-----GaCGUCGagCGUGC-GCCGCG- -5'
23596 5' -60.2 NC_005261.1 + 56432 0.67 0.634178
Target:  5'- -cCCGcCUGCGGag-GCG-GCGGCGCa -3'
miRNA:   3'- caGGCaGACGUCgagCGUgCGCCGCG- -5'
23596 5' -60.2 NC_005261.1 + 62291 0.67 0.634178
Target:  5'- aUCaCGUCgGCGccgcGCggGCGCGCGGCGg -3'
miRNA:   3'- cAG-GCAGaCGU----CGagCGUGCGCCGCg -5'
23596 5' -60.2 NC_005261.1 + 120409 0.67 0.643203
Target:  5'- --gCGUCUGCgcugagcggccugGGCUgGUgaacauGCGCGGCGUg -3'
miRNA:   3'- cagGCAGACG-------------UCGAgCG------UGCGCCGCG- -5'
23596 5' -60.2 NC_005261.1 + 69509 0.67 0.644206
Target:  5'- -gCCGgcggcgggCUGCcggAGCUgGCGCG-GGCGCu -3'
miRNA:   3'- caGGCa-------GACG---UCGAgCGUGCgCCGCG- -5'
23596 5' -60.2 NC_005261.1 + 93826 0.67 0.644206
Target:  5'- -aCCG-CcGCAGC-CGcCGgGCGGCGCc -3'
miRNA:   3'- caGGCaGaCGUCGaGC-GUgCGCCGCG- -5'
23596 5' -60.2 NC_005261.1 + 50621 0.67 0.644206
Target:  5'- -cCCGaUUGguGCUC-CACGCGG-GCg -3'
miRNA:   3'- caGGCaGACguCGAGcGUGCGCCgCG- -5'
23596 5' -60.2 NC_005261.1 + 95630 0.67 0.644206
Target:  5'- gGUCCaggaGCGGCUgggcgagcgCGaCGCGCGGCGCc -3'
miRNA:   3'- -CAGGcagaCGUCGA---------GC-GUGCGCCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.