miRNA display CGI


Results 61 - 80 of 275 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23596 5' -60.2 NC_005261.1 + 14866 0.71 0.424183
Target:  5'- -aUCG-C-GCAGUUCGCcauCGCGGCGCa -3'
miRNA:   3'- caGGCaGaCGUCGAGCGu--GCGCCGCG- -5'
23596 5' -60.2 NC_005261.1 + 3882 0.71 0.390387
Target:  5'- --aCGgcgcGCAGCUCGgcgaGCGCGGCGCg -3'
miRNA:   3'- cagGCaga-CGUCGAGCg---UGCGCCGCG- -5'
23596 5' -60.2 NC_005261.1 + 55170 0.71 0.39867
Target:  5'- -gCCGcCgGCGGCUCGCgggGCGgauCGGCGCa -3'
miRNA:   3'- caGGCaGaCGUCGAGCG---UGC---GCCGCG- -5'
23596 5' -60.2 NC_005261.1 + 4193 0.71 0.389565
Target:  5'- uUCgCGcUCUGCAGCcaggccaUgGCGuCGCGGCGCg -3'
miRNA:   3'- cAG-GC-AGACGUCG-------AgCGU-GCGCCGCG- -5'
23596 5' -60.2 NC_005261.1 + 2378 0.71 0.39867
Target:  5'- -gCCG-CcGCAGCggcgCGCugGCGGCGa -3'
miRNA:   3'- caGGCaGaCGUCGa---GCGugCGCCGCg -5'
23596 5' -60.2 NC_005261.1 + 115476 0.7 0.450647
Target:  5'- uGUCgGUC-GCGGgCUCGgcCGCgGCGGCGCg -3'
miRNA:   3'- -CAGgCAGaCGUC-GAGC--GUG-CGCCGCG- -5'
23596 5' -60.2 NC_005261.1 + 3728 0.7 0.477992
Target:  5'- -gCCG-CUGCcGgaCGCGCcgGCGGCGCa -3'
miRNA:   3'- caGGCaGACGuCgaGCGUG--CGCCGCG- -5'
23596 5' -60.2 NC_005261.1 + 106968 0.7 0.487288
Target:  5'- cUCCGcCU-CGGCgCGCGCGCcGCGCa -3'
miRNA:   3'- cAGGCaGAcGUCGaGCGUGCGcCGCG- -5'
23596 5' -60.2 NC_005261.1 + 36935 0.7 0.441724
Target:  5'- cUCCGgggccCUGCgcuggcgcaaGGCcCGcCGCGCGGCGCa -3'
miRNA:   3'- cAGGCa----GACG----------UCGaGC-GUGCGCCGCG- -5'
23596 5' -60.2 NC_005261.1 + 58203 0.7 0.483559
Target:  5'- cUCCGUCagcgcgcgcgccaGCAGCgCGCcCGCGGCGg -3'
miRNA:   3'- cAGGCAGa------------CGUCGaGCGuGCGCCGCg -5'
23596 5' -60.2 NC_005261.1 + 117726 0.7 0.477992
Target:  5'- -cCCGcaaGCGGC-CGCGCGCuGGCGCc -3'
miRNA:   3'- caGGCagaCGUCGaGCGUGCG-CCGCG- -5'
23596 5' -60.2 NC_005261.1 + 31420 0.7 0.487288
Target:  5'- -cCCG-CUGCccggGGaggCGCugGCGGCGCc -3'
miRNA:   3'- caGGCaGACG----UCga-GCGugCGCCGCG- -5'
23596 5' -60.2 NC_005261.1 + 99010 0.7 0.477992
Target:  5'- --gCGUCgcgaGCGGCggCGCG-GCGGCGCg -3'
miRNA:   3'- cagGCAGa---CGUCGa-GCGUgCGCCGCG- -5'
23596 5' -60.2 NC_005261.1 + 81276 0.7 0.459668
Target:  5'- -gCCGcCUGCgcgAGC-CGgaGCGCGGCGCg -3'
miRNA:   3'- caGGCaGACG---UCGaGCg-UGCGCCGCG- -5'
23596 5' -60.2 NC_005261.1 + 29395 0.7 0.487288
Target:  5'- aUCCG-CgagGCGGCcgcgCGCuACGCGGCGg -3'
miRNA:   3'- cAGGCaGa--CGUCGa---GCG-UGCGCCGCg -5'
23596 5' -60.2 NC_005261.1 + 10488 0.7 0.477992
Target:  5'- -cCCG-CUGCaccGGCUuuUGCGCGCGGcCGCc -3'
miRNA:   3'- caGGCaGACG---UCGA--GCGUGCGCC-GCG- -5'
23596 5' -60.2 NC_005261.1 + 98253 0.7 0.450647
Target:  5'- -cCCGg-UGCGGCgCGuCAgGCGGCGCg -3'
miRNA:   3'- caGGCagACGUCGaGC-GUgCGCCGCG- -5'
23596 5' -60.2 NC_005261.1 + 126559 0.7 0.441724
Target:  5'- -gCCGUCgcgcgcaaaugcUGCAGCa-GCGCGCGGCa- -3'
miRNA:   3'- caGGCAG------------ACGUCGagCGUGCGCCGcg -5'
23596 5' -60.2 NC_005261.1 + 62682 0.7 0.468784
Target:  5'- cGUCCGccagCUGCAcGCgccggCGCAgCGUGGCGa -3'
miRNA:   3'- -CAGGCa---GACGU-CGa----GCGU-GCGCCGCg -5'
23596 5' -60.2 NC_005261.1 + 53965 0.7 0.478918
Target:  5'- gGUUCGgguggcaaaagagcgCgGCgAGCUCcaGCGCGCGGCGCa -3'
miRNA:   3'- -CAGGCa--------------GaCG-UCGAG--CGUGCGCCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.