miRNA display CGI


Results 81 - 100 of 275 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23596 5' -60.2 NC_005261.1 + 31420 0.7 0.487288
Target:  5'- -cCCG-CUGCccggGGaggCGCugGCGGCGCc -3'
miRNA:   3'- caGGCaGACG----UCga-GCGugCGCCGCG- -5'
23596 5' -60.2 NC_005261.1 + 58203 0.7 0.483559
Target:  5'- cUCCGUCagcgcgcgcgccaGCAGCgCGCcCGCGGCGg -3'
miRNA:   3'- cAGGCAGa------------CGUCGaGCGuGCGCCGCg -5'
23596 5' -60.2 NC_005261.1 + 106968 0.7 0.487288
Target:  5'- cUCCGcCU-CGGCgCGCGCGCcGCGCa -3'
miRNA:   3'- cAGGCaGAcGUCGaGCGUGCGcCGCG- -5'
23596 5' -60.2 NC_005261.1 + 53965 0.7 0.478918
Target:  5'- gGUUCGgguggcaaaagagcgCgGCgAGCUCcaGCGCGCGGCGCa -3'
miRNA:   3'- -CAGGCa--------------GaCG-UCGAG--CGUGCGCCGCG- -5'
23596 5' -60.2 NC_005261.1 + 22642 0.69 0.50613
Target:  5'- -cCCGUCccUAGacgCGCugGCGGCGCc -3'
miRNA:   3'- caGGCAGacGUCga-GCGugCGCCGCG- -5'
23596 5' -60.2 NC_005261.1 + 41108 0.69 0.544691
Target:  5'- -gUCGUCcGCGGCgggcccgagCGCuuccuGCGUGGCGCg -3'
miRNA:   3'- caGGCAGaCGUCGa--------GCG-----UGCGCCGCG- -5'
23596 5' -60.2 NC_005261.1 + 57956 0.69 0.495727
Target:  5'- -cCCGUgUGCgcacgccGGCgacgcaggCGCGCGCGGcCGCg -3'
miRNA:   3'- caGGCAgACG-------UCGa-------GCGUGCGCC-GCG- -5'
23596 5' -60.2 NC_005261.1 + 100668 0.69 0.515668
Target:  5'- --gCGUCgcGgGGUUCGCGCGCGaGUGCa -3'
miRNA:   3'- cagGCAGa-CgUCGAGCGUGCGC-CGCG- -5'
23596 5' -60.2 NC_005261.1 + 4459 0.69 0.534953
Target:  5'- cUCCagcggCgGCGGCcCGuCGCGCGGCGCc -3'
miRNA:   3'- cAGGca---GaCGUCGaGC-GUGCGCCGCG- -5'
23596 5' -60.2 NC_005261.1 + 49764 0.69 0.544691
Target:  5'- -aCCGUCgUGUAGaUCaGCACGCGGaCGUc -3'
miRNA:   3'- caGGCAG-ACGUCgAG-CGUGCGCC-GCG- -5'
23596 5' -60.2 NC_005261.1 + 12879 0.69 0.50613
Target:  5'- --aCGUCgaGCGGCUCGUugGuCGGCa- -3'
miRNA:   3'- cagGCAGa-CGUCGAGCGugC-GCCGcg -5'
23596 5' -60.2 NC_005261.1 + 52204 0.69 0.544691
Target:  5'- -cCCG-CgGCGGCUCaGUAcaccuCGCGGCGCu -3'
miRNA:   3'- caGGCaGaCGUCGAG-CGU-----GCGCCGCG- -5'
23596 5' -60.2 NC_005261.1 + 75289 0.69 0.538841
Target:  5'- -gCUGUgcCUGCAcCUCGCGCaccgcgccaccgucgGCGGCGCg -3'
miRNA:   3'- caGGCA--GACGUcGAGCGUG---------------CGCCGCG- -5'
23596 5' -60.2 NC_005261.1 + 62198 0.69 0.50613
Target:  5'- -aCCaUgUGCAGCgcgagggUGCGCGCGGcCGCg -3'
miRNA:   3'- caGGcAgACGUCGa------GCGUGCGCC-GCG- -5'
23596 5' -60.2 NC_005261.1 + 124075 0.69 0.515668
Target:  5'- -gCCGaCUGCAGCccggCGCcCGCGuaGCGCg -3'
miRNA:   3'- caGGCaGACGUCGa---GCGuGCGC--CGCG- -5'
23596 5' -60.2 NC_005261.1 + 135423 0.69 0.515668
Target:  5'- uGUUCGaggUGC-GCUCGCACGCcgcccaggcGGCGCg -3'
miRNA:   3'- -CAGGCag-ACGuCGAGCGUGCG---------CCGCG- -5'
23596 5' -60.2 NC_005261.1 + 31345 0.69 0.534953
Target:  5'- -gCCG-CUGCGGCg-GCGCGUGGCc- -3'
miRNA:   3'- caGGCaGACGUCGagCGUGCGCCGcg -5'
23596 5' -60.2 NC_005261.1 + 32160 0.69 0.538841
Target:  5'- -gCCG-CUGCGGCcgguguaccuggccUGCGgGCGGCGCg -3'
miRNA:   3'- caGGCaGACGUCGa-------------GCGUgCGCCGCG- -5'
23596 5' -60.2 NC_005261.1 + 101132 0.69 0.544691
Target:  5'- gGUCC-UCgcgcgagGCuGC-CGCGCgGCGGCGCg -3'
miRNA:   3'- -CAGGcAGa------CGuCGaGCGUG-CGCCGCG- -5'
23596 5' -60.2 NC_005261.1 + 115768 0.69 0.544691
Target:  5'- -cCCGUCUcgGCGGCgucgaCGUACGCGuaGCc -3'
miRNA:   3'- caGGCAGA--CGUCGa----GCGUGCGCcgCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.