miRNA display CGI


Results 1 - 20 of 275 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23596 5' -60.2 NC_005261.1 + 93148 1.11 0.000752
Target:  5'- gGUCCGUCUGCAGCUCGCACGCGGCGCa -3'
miRNA:   3'- -CAGGCAGACGUCGAGCGUGCGCCGCG- -5'
23596 5' -60.2 NC_005261.1 + 31667 0.82 0.080668
Target:  5'- cUCUGcCUGCGGCUgGC-CGCGGCGCg -3'
miRNA:   3'- cAGGCaGACGUCGAgCGuGCGCCGCG- -5'
23596 5' -60.2 NC_005261.1 + 104206 0.81 0.091893
Target:  5'- --gCGUCcagGC-GCUCGCGCGCGGCGCg -3'
miRNA:   3'- cagGCAGa--CGuCGAGCGUGCGCCGCG- -5'
23596 5' -60.2 NC_005261.1 + 135181 0.79 0.134042
Target:  5'- -cUCG-CUGCGGCUCGCGCggagcauggccgagGCGGCGCa -3'
miRNA:   3'- caGGCaGACGUCGAGCGUG--------------CGCCGCG- -5'
23596 5' -60.2 NC_005261.1 + 131667 0.78 0.149407
Target:  5'- -aCCGUCUGCGagggugcgaccGCccUGCGCGCGGCGCu -3'
miRNA:   3'- caGGCAGACGU-----------CGa-GCGUGCGCCGCG- -5'
23596 5' -60.2 NC_005261.1 + 71181 0.78 0.165122
Target:  5'- cGUCCGggcGCAGCUCGCgggGCGCGGCcaGCu -3'
miRNA:   3'- -CAGGCagaCGUCGAGCG---UGCGCCG--CG- -5'
23596 5' -60.2 NC_005261.1 + 63723 0.77 0.177866
Target:  5'- gGUCCGUgaGCGGCgugCGCAuggcCGCGGCGg -3'
miRNA:   3'- -CAGGCAgaCGUCGa--GCGU----GCGCCGCg -5'
23596 5' -60.2 NC_005261.1 + 99387 0.77 0.177866
Target:  5'- -aCCGUCUGCAcCUCGCugGgCGGCuGCc -3'
miRNA:   3'- caGGCAGACGUcGAGCGugC-GCCG-CG- -5'
23596 5' -60.2 NC_005261.1 + 29553 0.77 0.182305
Target:  5'- -cCCGgacCUGCAGCUgGCGCGCcugcugcagcGGCGCg -3'
miRNA:   3'- caGGCa--GACGUCGAgCGUGCG----------CCGCG- -5'
23596 5' -60.2 NC_005261.1 + 85553 0.77 0.191477
Target:  5'- cUCCGUCUGCGGCgcCGCGagguuCGGCGCc -3'
miRNA:   3'- cAGGCAGACGUCGa-GCGUgc---GCCGCG- -5'
23596 5' -60.2 NC_005261.1 + 101092 0.76 0.196213
Target:  5'- -gCCGcCUGCAGCgcggccgCGCGCGCcuuGGCGCc -3'
miRNA:   3'- caGGCaGACGUCGa------GCGUGCG---CCGCG- -5'
23596 5' -60.2 NC_005261.1 + 96600 0.76 0.201052
Target:  5'- cUCUG-CcGCAGCacgUCGCGCGUGGCGCg -3'
miRNA:   3'- cAGGCaGaCGUCG---AGCGUGCGCCGCG- -5'
23596 5' -60.2 NC_005261.1 + 101862 0.75 0.243589
Target:  5'- -gCCGcCUGCAGCacgucCGCGCGCagGGCGCc -3'
miRNA:   3'- caGGCaGACGUCGa----GCGUGCG--CCGCG- -5'
23596 5' -60.2 NC_005261.1 + 53009 0.75 0.255333
Target:  5'- --gCGUCggcGCAGCUCGCcagcgcuucCGCGGCGCc -3'
miRNA:   3'- cagGCAGa--CGUCGAGCGu--------GCGCCGCG- -5'
23596 5' -60.2 NC_005261.1 + 46801 0.74 0.261376
Target:  5'- -cCCGUC-GCGGCgCGCGCGgaUGGCGCg -3'
miRNA:   3'- caGGCAGaCGUCGaGCGUGC--GCCGCG- -5'
23596 5' -60.2 NC_005261.1 + 39027 0.74 0.261376
Target:  5'- cGUCCG-CgaGCAGCUC-CACGCGGUGa -3'
miRNA:   3'- -CAGGCaGa-CGUCGAGcGUGCGCCGCg -5'
23596 5' -60.2 NC_005261.1 + 131179 0.74 0.267536
Target:  5'- -gCCG-CaGCGGCUaCGCcCGCGGCGCg -3'
miRNA:   3'- caGGCaGaCGUCGA-GCGuGCGCCGCG- -5'
23596 5' -60.2 NC_005261.1 + 68110 0.74 0.267536
Target:  5'- aGUUCGggCUGgAGCUgCGCGggcCGCGGCGCg -3'
miRNA:   3'- -CAGGCa-GACgUCGA-GCGU---GCGCCGCG- -5'
23596 5' -60.2 NC_005261.1 + 30206 0.74 0.273813
Target:  5'- -gCUGgagGCGGCcgCGCugGCGGCGCg -3'
miRNA:   3'- caGGCagaCGUCGa-GCGugCGCCGCG- -5'
23596 5' -60.2 NC_005261.1 + 132359 0.74 0.280207
Target:  5'- uUCCGcCgcgGCGcGCUCGCcgcgcuCGCGGCGCu -3'
miRNA:   3'- cAGGCaGa--CGU-CGAGCGu-----GCGCCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.