miRNA display CGI


Results 21 - 40 of 275 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23596 5' -60.2 NC_005261.1 + 89087 0.74 0.280207
Target:  5'- -aCCGgCUGCGGCccgggcgCGCugGCGcGCGCg -3'
miRNA:   3'- caGGCaGACGUCGa------GCGugCGC-CGCG- -5'
23596 5' -60.2 NC_005261.1 + 107175 0.74 0.282797
Target:  5'- cUCCGUCucggcggcguagcccUGCAGC-CGCGCgaagGCGGCGUg -3'
miRNA:   3'- cAGGCAG---------------ACGUCGaGCGUG----CGCCGCG- -5'
23596 5' -60.2 NC_005261.1 + 12637 0.73 0.300099
Target:  5'- aGUCCGgcgcggUCUGgGGC-CGCGC-CGGCGCg -3'
miRNA:   3'- -CAGGC------AGACgUCGaGCGUGcGCCGCG- -5'
23596 5' -60.2 NC_005261.1 + 66587 0.73 0.300099
Target:  5'- -aCCGUCUGCAcgUUGCGCGCgagcugcuggauGGCGCg -3'
miRNA:   3'- caGGCAGACGUcgAGCGUGCG------------CCGCG- -5'
23596 5' -60.2 NC_005261.1 + 102643 0.73 0.300099
Target:  5'- cUUCGUCcGCGGCcCGCAgcaccuccucCGCGGCGCc -3'
miRNA:   3'- cAGGCAGaCGUCGaGCGU----------GCGCCGCG- -5'
23596 5' -60.2 NC_005261.1 + 59934 0.73 0.320349
Target:  5'- -gCCGUCgGCcaucuccAGC-CGCAgCGCGGCGCg -3'
miRNA:   3'- caGGCAGaCG-------UCGaGCGU-GCGCCGCG- -5'
23596 5' -60.2 NC_005261.1 + 93748 0.73 0.321066
Target:  5'- cUUCGUacucgGCGGCccgcgCGCGCGCGGCGUc -3'
miRNA:   3'- cAGGCAga---CGUCGa----GCGUGCGCCGCG- -5'
23596 5' -60.2 NC_005261.1 + 12082 0.73 0.321066
Target:  5'- cGUCCG-CgccgggGCGGCUCaaagGCGCGGCGCc -3'
miRNA:   3'- -CAGGCaGa-----CGUCGAGcg--UGCGCCGCG- -5'
23596 5' -60.2 NC_005261.1 + 29839 0.73 0.328294
Target:  5'- -gCCGagCUGCGcgccguGCUCGCcggccGCGCGGCGCc -3'
miRNA:   3'- caGGCa-GACGU------CGAGCG-----UGCGCCGCG- -5'
23596 5' -60.2 NC_005261.1 + 11925 0.73 0.328294
Target:  5'- -gCCGgcggCUGCGGCggccCGCGcCGCGGCGg -3'
miRNA:   3'- caGGCa---GACGUCGa---GCGU-GCGCCGCg -5'
23596 5' -60.2 NC_005261.1 + 118251 0.73 0.328294
Target:  5'- -gCCGUCUGCGGCgugccggUGCACuGC-GCGCa -3'
miRNA:   3'- caGGCAGACGUCGa------GCGUG-CGcCGCG- -5'
23596 5' -60.2 NC_005261.1 + 108156 0.73 0.332688
Target:  5'- -aCCGcCUGCAGCgcguccgccaggGCGCGCGGcCGCg -3'
miRNA:   3'- caGGCaGACGUCGag----------CGUGCGCC-GCG- -5'
23596 5' -60.2 NC_005261.1 + 47930 0.73 0.335642
Target:  5'- cGUCaCGUCccGCGcGC-CGCGCGCGaGCGCg -3'
miRNA:   3'- -CAG-GCAGa-CGU-CGaGCGUGCGC-CGCG- -5'
23596 5' -60.2 NC_005261.1 + 35123 0.73 0.335642
Target:  5'- -gCCGcCgGCGGCgUCGCAccccgccccCGCGGCGCa -3'
miRNA:   3'- caGGCaGaCGUCG-AGCGU---------GCGCCGCG- -5'
23596 5' -60.2 NC_005261.1 + 82917 0.73 0.338615
Target:  5'- aUCCagaaCUGCAGCUCGCugaccgcguaaagccAgCGCGGCGCc -3'
miRNA:   3'- cAGGca--GACGUCGAGCG---------------U-GCGCCGCG- -5'
23596 5' -60.2 NC_005261.1 + 118940 0.72 0.343109
Target:  5'- -gCCG-C-GCGGCUgGC-CGCGGCGCa -3'
miRNA:   3'- caGGCaGaCGUCGAgCGuGCGCCGCG- -5'
23596 5' -60.2 NC_005261.1 + 91710 0.72 0.343109
Target:  5'- -gCCGgCUGCaaggccGGCUCGC-CGCGGCGg -3'
miRNA:   3'- caGGCaGACG------UCGAGCGuGCGCCGCg -5'
23596 5' -60.2 NC_005261.1 + 106874 0.72 0.343109
Target:  5'- cGUCCGcggccucgcacucCUGCAGCgccugcgucguccgCGC-CGCGGCGCg -3'
miRNA:   3'- -CAGGCa------------GACGUCGa-------------GCGuGCGCCGCG- -5'
23596 5' -60.2 NC_005261.1 + 110523 0.72 0.350696
Target:  5'- -gUCGUCUGCGGggCGCAgGagGGCGCg -3'
miRNA:   3'- caGGCAGACGUCgaGCGUgCg-CCGCG- -5'
23596 5' -60.2 NC_005261.1 + 38273 0.72 0.3584
Target:  5'- -gCUGgggGCGGCUggUGCACGCGGUGCu -3'
miRNA:   3'- caGGCagaCGUCGA--GCGUGCGCCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.