miRNA display CGI


Results 41 - 60 of 275 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23596 5' -60.2 NC_005261.1 + 38273 0.72 0.3584
Target:  5'- -gCUGgggGCGGCUggUGCACGCGGUGCu -3'
miRNA:   3'- caGGCagaCGUCGA--GCGUGCGCCGCG- -5'
23596 5' -60.2 NC_005261.1 + 133320 0.72 0.366223
Target:  5'- -gCUGcUCgcGCAGCUccugccggcacgCGCGCGCGGCGCu -3'
miRNA:   3'- caGGC-AGa-CGUCGA------------GCGUGCGCCGCG- -5'
23596 5' -60.2 NC_005261.1 + 72182 0.72 0.374162
Target:  5'- cGUCCGagaCguugGCGGCggcCGCGCGCGGCa- -3'
miRNA:   3'- -CAGGCa--Ga---CGUCGa--GCGUGCGCCGcg -5'
23596 5' -60.2 NC_005261.1 + 80842 0.72 0.374162
Target:  5'- cGUCCGUCgugUGcCAGCcgCGCACcccaGGCGCg -3'
miRNA:   3'- -CAGGCAG---AC-GUCGa-GCGUGcg--CCGCG- -5'
23596 5' -60.2 NC_005261.1 + 98146 0.72 0.382217
Target:  5'- -gCCGUCgGCGGCaaggcCGCGgGCGGCGg -3'
miRNA:   3'- caGGCAGaCGUCGa----GCGUgCGCCGCg -5'
23596 5' -60.2 NC_005261.1 + 103937 0.72 0.382217
Target:  5'- cGUCUGccagacgCUGCAGCggCGCGacCGCGGCGg -3'
miRNA:   3'- -CAGGCa------GACGUCGa-GCGU--GCGCCGCg -5'
23596 5' -60.2 NC_005261.1 + 4193 0.71 0.389565
Target:  5'- uUCgCGcUCUGCAGCcaggccaUgGCGuCGCGGCGCg -3'
miRNA:   3'- cAG-GC-AGACGUCG-------AgCGU-GCGCCGCG- -5'
23596 5' -60.2 NC_005261.1 + 3882 0.71 0.390387
Target:  5'- --aCGgcgcGCAGCUCGgcgaGCGCGGCGCg -3'
miRNA:   3'- cagGCaga-CGUCGAGCg---UGCGCCGCG- -5'
23596 5' -60.2 NC_005261.1 + 95811 0.71 0.390387
Target:  5'- -gCCGgcgGgGGCUCGCGguccuCGCGGCGCu -3'
miRNA:   3'- caGGCagaCgUCGAGCGU-----GCGCCGCG- -5'
23596 5' -60.2 NC_005261.1 + 72523 0.71 0.39867
Target:  5'- aUCC-UCcuugGCGGCUCGCuGCGCGGCa- -3'
miRNA:   3'- cAGGcAGa---CGUCGAGCG-UGCGCCGcg -5'
23596 5' -60.2 NC_005261.1 + 55170 0.71 0.39867
Target:  5'- -gCCGcCgGCGGCUCGCgggGCGgauCGGCGCa -3'
miRNA:   3'- caGGCaGaCGUCGAGCG---UGC---GCCGCG- -5'
23596 5' -60.2 NC_005261.1 + 2378 0.71 0.39867
Target:  5'- -gCCG-CcGCAGCggcgCGCugGCGGCGa -3'
miRNA:   3'- caGGCaGaCGUCGa---GCGugCGCCGCg -5'
23596 5' -60.2 NC_005261.1 + 64033 0.71 0.407065
Target:  5'- uUCuCGUCggcGCGGCUCuGCgccGCGUGGUGCg -3'
miRNA:   3'- cAG-GCAGa--CGUCGAG-CG---UGCGCCGCG- -5'
23596 5' -60.2 NC_005261.1 + 70810 0.71 0.407065
Target:  5'- aGUCCG-CgccgGCGGCcccgggCGCGC-CGGCGCg -3'
miRNA:   3'- -CAGGCaGa---CGUCGa-----GCGUGcGCCGCG- -5'
23596 5' -60.2 NC_005261.1 + 58884 0.71 0.41557
Target:  5'- gGUCCGg--GCGGgcCUCGCAgGCGcGCGCc -3'
miRNA:   3'- -CAGGCagaCGUC--GAGCGUgCGC-CGCG- -5'
23596 5' -60.2 NC_005261.1 + 87093 0.71 0.41557
Target:  5'- -gCCGUgCaGCAGCgCGCagaGCGCGGCGUu -3'
miRNA:   3'- caGGCA-GaCGUCGaGCG---UGCGCCGCG- -5'
23596 5' -60.2 NC_005261.1 + 3537 0.71 0.41557
Target:  5'- -gCCGcCUcggcgcGCAGCgcggCGgGCGCGGCGCc -3'
miRNA:   3'- caGGCaGA------CGUCGa---GCgUGCGCCGCG- -5'
23596 5' -60.2 NC_005261.1 + 14866 0.71 0.424183
Target:  5'- -aUCG-C-GCAGUUCGCcauCGCGGCGCa -3'
miRNA:   3'- caGGCaGaCGUCGAGCGu--GCGCCGCG- -5'
23596 5' -60.2 NC_005261.1 + 30242 0.71 0.424183
Target:  5'- -cCCG-CUggcGCGGUacUCGaCGCGCGGCGCg -3'
miRNA:   3'- caGGCaGA---CGUCG--AGC-GUGCGCCGCG- -5'
23596 5' -60.2 NC_005261.1 + 117933 0.71 0.424183
Target:  5'- -gCCGgCUGCGGCccgUGCGCGCucgcugcuacgGGCGCg -3'
miRNA:   3'- caGGCaGACGUCGa--GCGUGCG-----------CCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.