miRNA display CGI


Results 61 - 80 of 275 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23596 5' -60.2 NC_005261.1 + 51810 0.71 0.430275
Target:  5'- -cUCGUgCUGCGGCUggUGCGCGCcugccugcaccaccGGCGCa -3'
miRNA:   3'- caGGCA-GACGUCGA--GCGUGCG--------------CCGCG- -5'
23596 5' -60.2 NC_005261.1 + 16993 0.71 0.432902
Target:  5'- gGUCCG-CgauCAGCgccagcaugUCGCACGCGGcCGCg -3'
miRNA:   3'- -CAGGCaGac-GUCG---------AGCGUGCGCC-GCG- -5'
23596 5' -60.2 NC_005261.1 + 128493 0.71 0.432902
Target:  5'- -cUCGUCgUGgAGCUCG-ACGCGGCGg -3'
miRNA:   3'- caGGCAG-ACgUCGAGCgUGCGCCGCg -5'
23596 5' -60.2 NC_005261.1 + 130247 0.71 0.432902
Target:  5'- -gCCG-CgccaGCGGCUCGUACuGCGGgGCg -3'
miRNA:   3'- caGGCaGa---CGUCGAGCGUG-CGCCgCG- -5'
23596 5' -60.2 NC_005261.1 + 93340 0.71 0.432902
Target:  5'- cGUCCGcgcGCAGCgCGCGCaGCGcGCGCc -3'
miRNA:   3'- -CAGGCagaCGUCGaGCGUG-CGC-CGCG- -5'
23596 5' -60.2 NC_005261.1 + 36935 0.7 0.441724
Target:  5'- cUCCGgggccCUGCgcuggcgcaaGGCcCGcCGCGCGGCGCa -3'
miRNA:   3'- cAGGCa----GACG----------UCGaGC-GUGCGCCGCG- -5'
23596 5' -60.2 NC_005261.1 + 93670 0.7 0.441724
Target:  5'- gGUCCG-CggGCGGCggCGCcgGCGgGGCGCc -3'
miRNA:   3'- -CAGGCaGa-CGUCGa-GCG--UGCgCCGCG- -5'
23596 5' -60.2 NC_005261.1 + 126559 0.7 0.441724
Target:  5'- -gCCGUCgcgcgcaaaugcUGCAGCa-GCGCGCGGCa- -3'
miRNA:   3'- caGGCAG------------ACGUCGagCGUGCGCCGcg -5'
23596 5' -60.2 NC_005261.1 + 115476 0.7 0.450647
Target:  5'- uGUCgGUC-GCGGgCUCGgcCGCgGCGGCGCg -3'
miRNA:   3'- -CAGgCAGaCGUC-GAGC--GUG-CGCCGCG- -5'
23596 5' -60.2 NC_005261.1 + 98253 0.7 0.450647
Target:  5'- -cCCGg-UGCGGCgCGuCAgGCGGCGCg -3'
miRNA:   3'- caGGCagACGUCGaGC-GUgCGCCGCG- -5'
23596 5' -60.2 NC_005261.1 + 80049 0.7 0.459668
Target:  5'- -gCCGUCgccacugGCGGCgggCGCGgGgGGCGUg -3'
miRNA:   3'- caGGCAGa------CGUCGa--GCGUgCgCCGCG- -5'
23596 5' -60.2 NC_005261.1 + 81276 0.7 0.459668
Target:  5'- -gCCGcCUGCgcgAGC-CGgaGCGCGGCGCg -3'
miRNA:   3'- caGGCaGACG---UCGaGCg-UGCGCCGCG- -5'
23596 5' -60.2 NC_005261.1 + 21679 0.7 0.459668
Target:  5'- cUCCGgCUGgGGCUCGaGCGCGuCGCg -3'
miRNA:   3'- cAGGCaGACgUCGAGCgUGCGCcGCG- -5'
23596 5' -60.2 NC_005261.1 + 62682 0.7 0.468784
Target:  5'- cGUCCGccagCUGCAcGCgccggCGCAgCGUGGCGa -3'
miRNA:   3'- -CAGGCa---GACGU-CGa----GCGU-GCGCCGCg -5'
23596 5' -60.2 NC_005261.1 + 81344 0.7 0.472456
Target:  5'- -gCCGUCggcggggcgggggcuUGCggggggcgccgGGCUCGCugGgGGCGCc -3'
miRNA:   3'- caGGCAG---------------ACG-----------UCGAGCGugCgCCGCG- -5'
23596 5' -60.2 NC_005261.1 + 3728 0.7 0.477992
Target:  5'- -gCCG-CUGCcGgaCGCGCcgGCGGCGCa -3'
miRNA:   3'- caGGCaGACGuCgaGCGUG--CGCCGCG- -5'
23596 5' -60.2 NC_005261.1 + 117726 0.7 0.477992
Target:  5'- -cCCGcaaGCGGC-CGCGCGCuGGCGCc -3'
miRNA:   3'- caGGCagaCGUCGaGCGUGCG-CCGCG- -5'
23596 5' -60.2 NC_005261.1 + 99010 0.7 0.477992
Target:  5'- --gCGUCgcgaGCGGCggCGCG-GCGGCGCg -3'
miRNA:   3'- cagGCAGa---CGUCGa-GCGUgCGCCGCG- -5'
23596 5' -60.2 NC_005261.1 + 10488 0.7 0.477992
Target:  5'- -cCCG-CUGCaccGGCUuuUGCGCGCGGcCGCc -3'
miRNA:   3'- caGGCaGACG---UCGA--GCGUGCGCC-GCG- -5'
23596 5' -60.2 NC_005261.1 + 53965 0.7 0.478918
Target:  5'- gGUUCGgguggcaaaagagcgCgGCgAGCUCcaGCGCGCGGCGCa -3'
miRNA:   3'- -CAGGCa--------------GaCG-UCGAG--CGUGCGCCGCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.