miRNA display CGI


Results 81 - 100 of 275 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23596 5' -60.2 NC_005261.1 + 58203 0.7 0.483559
Target:  5'- cUCCGUCagcgcgcgcgccaGCAGCgCGCcCGCGGCGg -3'
miRNA:   3'- cAGGCAGa------------CGUCGaGCGuGCGCCGCg -5'
23596 5' -60.2 NC_005261.1 + 106968 0.7 0.487288
Target:  5'- cUCCGcCU-CGGCgCGCGCGCcGCGCa -3'
miRNA:   3'- cAGGCaGAcGUCGaGCGUGCGcCGCG- -5'
23596 5' -60.2 NC_005261.1 + 29395 0.7 0.487288
Target:  5'- aUCCG-CgagGCGGCcgcgCGCuACGCGGCGg -3'
miRNA:   3'- cAGGCaGa--CGUCGa---GCG-UGCGCCGCg -5'
23596 5' -60.2 NC_005261.1 + 31420 0.7 0.487288
Target:  5'- -cCCG-CUGCccggGGaggCGCugGCGGCGCc -3'
miRNA:   3'- caGGCaGACG----UCga-GCGugCGCCGCG- -5'
23596 5' -60.2 NC_005261.1 + 57956 0.69 0.495727
Target:  5'- -cCCGUgUGCgcacgccGGCgacgcaggCGCGCGCGGcCGCg -3'
miRNA:   3'- caGGCAgACG-------UCGa-------GCGUGCGCC-GCG- -5'
23596 5' -60.2 NC_005261.1 + 22642 0.69 0.50613
Target:  5'- -cCCGUCccUAGacgCGCugGCGGCGCc -3'
miRNA:   3'- caGGCAGacGUCga-GCGugCGCCGCG- -5'
23596 5' -60.2 NC_005261.1 + 12879 0.69 0.50613
Target:  5'- --aCGUCgaGCGGCUCGUugGuCGGCa- -3'
miRNA:   3'- cagGCAGa-CGUCGAGCGugC-GCCGcg -5'
23596 5' -60.2 NC_005261.1 + 62198 0.69 0.50613
Target:  5'- -aCCaUgUGCAGCgcgagggUGCGCGCGGcCGCg -3'
miRNA:   3'- caGGcAgACGUCGa------GCGUGCGCC-GCG- -5'
23596 5' -60.2 NC_005261.1 + 74937 0.69 0.50613
Target:  5'- --aCGgggaCUGCGGCgcgggCGCGCuCGGCGCg -3'
miRNA:   3'- cagGCa---GACGUCGa----GCGUGcGCCGCG- -5'
23596 5' -60.2 NC_005261.1 + 115560 0.69 0.50613
Target:  5'- gGUCCGUgUGgCAGCacaCGaACGCGGCGa -3'
miRNA:   3'- -CAGGCAgAC-GUCGa--GCgUGCGCCGCg -5'
23596 5' -60.2 NC_005261.1 + 100668 0.69 0.515668
Target:  5'- --gCGUCgcGgGGUUCGCGCGCGaGUGCa -3'
miRNA:   3'- cagGCAGa-CgUCGAGCGUGCGC-CGCG- -5'
23596 5' -60.2 NC_005261.1 + 124075 0.69 0.515668
Target:  5'- -gCCGaCUGCAGCccggCGCcCGCGuaGCGCg -3'
miRNA:   3'- caGGCaGACGUCGa---GCGuGCGC--CGCG- -5'
23596 5' -60.2 NC_005261.1 + 135423 0.69 0.515668
Target:  5'- uGUUCGaggUGC-GCUCGCACGCcgcccaggcGGCGCg -3'
miRNA:   3'- -CAGGCag-ACGuCGAGCGUGCG---------CCGCG- -5'
23596 5' -60.2 NC_005261.1 + 3796 0.69 0.524313
Target:  5'- gGUCCGccagCUcGCGcagccGCUCGCGCGCugccgcgggcccgGGCGCu -3'
miRNA:   3'- -CAGGCa---GA-CGU-----CGAGCGUGCG-------------CCGCG- -5'
23596 5' -60.2 NC_005261.1 + 105904 0.69 0.525277
Target:  5'- cUCCGggcgCggGCcGCUCGCGCGCGcccacgccGCGCc -3'
miRNA:   3'- cAGGCa---Ga-CGuCGAGCGUGCGC--------CGCG- -5'
23596 5' -60.2 NC_005261.1 + 34370 0.69 0.525277
Target:  5'- -gCCG-C-GCGGCgccgCGCgcagACGCGGCGCa -3'
miRNA:   3'- caGGCaGaCGUCGa---GCG----UGCGCCGCG- -5'
23596 5' -60.2 NC_005261.1 + 105151 0.69 0.525277
Target:  5'- gGUCC-UC-GCGGCUCGaGgGCGGCGUc -3'
miRNA:   3'- -CAGGcAGaCGUCGAGCgUgCGCCGCG- -5'
23596 5' -60.2 NC_005261.1 + 32251 0.69 0.525277
Target:  5'- -gCCGcgCUGCuggAGC-CGCACGCcgaGGCGCc -3'
miRNA:   3'- caGGCa-GACG---UCGaGCGUGCG---CCGCG- -5'
23596 5' -60.2 NC_005261.1 + 47883 0.69 0.525277
Target:  5'- cGUCCGgggaGCGGCg-GCG-GCGGCGCg -3'
miRNA:   3'- -CAGGCaga-CGUCGagCGUgCGCCGCG- -5'
23596 5' -60.2 NC_005261.1 + 116140 0.69 0.533013
Target:  5'- aUCCG-CaGCAGCgagaggaagcaGCGCGCGGuCGCg -3'
miRNA:   3'- cAGGCaGaCGUCGag---------CGUGCGCC-GCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.