miRNA display CGI


Results 101 - 120 of 275 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23596 5' -60.2 NC_005261.1 + 4459 0.69 0.534953
Target:  5'- cUCCagcggCgGCGGCcCGuCGCGCGGCGCc -3'
miRNA:   3'- cAGGca---GaCGUCGaGC-GUGCGCCGCG- -5'
23596 5' -60.2 NC_005261.1 + 31345 0.69 0.534953
Target:  5'- -gCCG-CUGCGGCg-GCGCGUGGCc- -3'
miRNA:   3'- caGGCaGACGUCGagCGUGCGCCGcg -5'
23596 5' -60.2 NC_005261.1 + 57783 0.69 0.534953
Target:  5'- ---aGUCcGCGGCgUCGCGCGgCGGgCGCg -3'
miRNA:   3'- caggCAGaCGUCG-AGCGUGC-GCC-GCG- -5'
23596 5' -60.2 NC_005261.1 + 32160 0.69 0.538841
Target:  5'- -gCCG-CUGCGGCcgguguaccuggccUGCGgGCGGCGCg -3'
miRNA:   3'- caGGCaGACGUCGa-------------GCGUgCGCCGCG- -5'
23596 5' -60.2 NC_005261.1 + 75289 0.69 0.538841
Target:  5'- -gCUGUgcCUGCAcCUCGCGCaccgcgccaccgucgGCGGCGCg -3'
miRNA:   3'- caGGCA--GACGUcGAGCGUG---------------CGCCGCG- -5'
23596 5' -60.2 NC_005261.1 + 115768 0.69 0.544691
Target:  5'- -cCCGUCUcgGCGGCgucgaCGUACGCGuaGCc -3'
miRNA:   3'- caGGCAGA--CGUCGa----GCGUGCGCcgCG- -5'
23596 5' -60.2 NC_005261.1 + 101132 0.69 0.544691
Target:  5'- gGUCC-UCgcgcgagGCuGC-CGCGCgGCGGCGCg -3'
miRNA:   3'- -CAGGcAGa------CGuCGaGCGUG-CGCCGCG- -5'
23596 5' -60.2 NC_005261.1 + 52204 0.69 0.544691
Target:  5'- -cCCG-CgGCGGCUCaGUAcaccuCGCGGCGCu -3'
miRNA:   3'- caGGCaGaCGUCGAG-CGU-----GCGCCGCG- -5'
23596 5' -60.2 NC_005261.1 + 133884 0.69 0.544691
Target:  5'- -gUgGUCUGC-GCaaGCcCGCGGCGCg -3'
miRNA:   3'- caGgCAGACGuCGagCGuGCGCCGCG- -5'
23596 5' -60.2 NC_005261.1 + 49764 0.69 0.544691
Target:  5'- -aCCGUCgUGUAGaUCaGCACGCGGaCGUc -3'
miRNA:   3'- caGGCAG-ACGUCgAG-CGUGCGCC-GCG- -5'
23596 5' -60.2 NC_005261.1 + 41108 0.69 0.544691
Target:  5'- -gUCGUCcGCGGCgggcccgagCGCuuccuGCGUGGCGCg -3'
miRNA:   3'- caGGCAGaCGUCGa--------GCG-----UGCGCCGCG- -5'
23596 5' -60.2 NC_005261.1 + 103417 0.68 0.554486
Target:  5'- cUCCGcgCgggccGCGGCcaCGCGCGCGcGCGCc -3'
miRNA:   3'- cAGGCa-Ga----CGUCGa-GCGUGCGC-CGCG- -5'
23596 5' -60.2 NC_005261.1 + 73458 0.68 0.554486
Target:  5'- cGUCCGcgUCcGCgcgcccccccugGGC-CGCgGCGCGGCGCg -3'
miRNA:   3'- -CAGGC--AGaCG------------UCGaGCG-UGCGCCGCG- -5'
23596 5' -60.2 NC_005261.1 + 121052 0.68 0.554486
Target:  5'- cGUCgCGgUUGUGGCgcgcggUGUGCGCGGCGCc -3'
miRNA:   3'- -CAG-GCaGACGUCGa-----GCGUGCGCCGCG- -5'
23596 5' -60.2 NC_005261.1 + 93486 0.68 0.554486
Target:  5'- --gCGUCgcccGCGGCgaagCGCGCgaaccGCGGCGCc -3'
miRNA:   3'- cagGCAGa---CGUCGa---GCGUG-----CGCCGCG- -5'
23596 5' -60.2 NC_005261.1 + 76138 0.68 0.554486
Target:  5'- -cCCGUCgUGgAGgUCGUG-GCGGCGCa -3'
miRNA:   3'- caGGCAG-ACgUCgAGCGUgCGCCGCG- -5'
23596 5' -60.2 NC_005261.1 + 69788 0.68 0.554486
Target:  5'- -gCCGcUCccGCGGCgCGCG-GCGGCGCg -3'
miRNA:   3'- caGGC-AGa-CGUCGaGCGUgCGCCGCG- -5'
23596 5' -60.2 NC_005261.1 + 31930 0.68 0.554486
Target:  5'- -gCCG-CUG-GGCUCuGC-CGCGGCGCc -3'
miRNA:   3'- caGGCaGACgUCGAG-CGuGCGCCGCG- -5'
23596 5' -60.2 NC_005261.1 + 121832 0.68 0.554486
Target:  5'- -gCCG-CcGCGGCggCGCAC-CGGCGCc -3'
miRNA:   3'- caGGCaGaCGUCGa-GCGUGcGCCGCG- -5'
23596 5' -60.2 NC_005261.1 + 14427 0.68 0.554486
Target:  5'- -gCUGUCUcacggaacuCGGCUCGCucGCGgGGCGCg -3'
miRNA:   3'- caGGCAGAc--------GUCGAGCG--UGCgCCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.