miRNA display CGI


Results 121 - 140 of 275 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23596 5' -60.2 NC_005261.1 + 73458 0.68 0.554486
Target:  5'- cGUCCGcgUCcGCgcgcccccccugGGC-CGCgGCGCGGCGCg -3'
miRNA:   3'- -CAGGC--AGaCG------------UCGaGCG-UGCGCCGCG- -5'
23596 5' -60.2 NC_005261.1 + 106393 0.68 0.564333
Target:  5'- -gCCG-CUGuCGGCgacaUC-CGCGCGGCGCu -3'
miRNA:   3'- caGGCaGAC-GUCG----AGcGUGCGCCGCG- -5'
23596 5' -60.2 NC_005261.1 + 90783 0.68 0.564333
Target:  5'- -gCCG-CUGCGGCggccggCGCGCGCuaccGCGUg -3'
miRNA:   3'- caGGCaGACGUCGa-----GCGUGCGc---CGCG- -5'
23596 5' -60.2 NC_005261.1 + 37188 0.68 0.564333
Target:  5'- -gCUG-CUgGCGGCgcuGCugGCGGCGCu -3'
miRNA:   3'- caGGCaGA-CGUCGag-CGugCGCCGCG- -5'
23596 5' -60.2 NC_005261.1 + 83311 0.68 0.564333
Target:  5'- ---gGUCgUGCAGCUCGg--GCGGCGCc -3'
miRNA:   3'- caggCAG-ACGUCGAGCgugCGCCGCG- -5'
23596 5' -60.2 NC_005261.1 + 51285 0.68 0.564333
Target:  5'- -gCCGUCcuggccGCGGCcaccuaccucgCGCACGCcGGCGCc -3'
miRNA:   3'- caGGCAGa-----CGUCGa----------GCGUGCG-CCGCG- -5'
23596 5' -60.2 NC_005261.1 + 109180 0.68 0.564333
Target:  5'- cUCCG-CUaGCAGCgccgcgucgggCGUGCGCaGGCGCu -3'
miRNA:   3'- cAGGCaGA-CGUCGa----------GCGUGCG-CCGCG- -5'
23596 5' -60.2 NC_005261.1 + 31751 0.68 0.574225
Target:  5'- -gCCGUCggGCAGg-CGCACGUGuaccuGCGCg -3'
miRNA:   3'- caGGCAGa-CGUCgaGCGUGCGC-----CGCG- -5'
23596 5' -60.2 NC_005261.1 + 108286 0.68 0.574225
Target:  5'- gGUCCGgcgUUGC-GCUCGCcuGCaCGGCGUc -3'
miRNA:   3'- -CAGGCa--GACGuCGAGCG--UGcGCCGCG- -5'
23596 5' -60.2 NC_005261.1 + 82571 0.68 0.574225
Target:  5'- -gCCG-CaGCAGCUCGCGCaGCGcguccucguuGCGCu -3'
miRNA:   3'- caGGCaGaCGUCGAGCGUG-CGC----------CGCG- -5'
23596 5' -60.2 NC_005261.1 + 21771 0.68 0.574225
Target:  5'- -gCCGg--GCgAGC-CGC-CGCGGCGCg -3'
miRNA:   3'- caGGCagaCG-UCGaGCGuGCGCCGCG- -5'
23596 5' -60.2 NC_005261.1 + 1684 0.68 0.574225
Target:  5'- -cCCGUCgagccgcgGCAGCacgCGCugccgguacucGCGCGGCGg -3'
miRNA:   3'- caGGCAGa-------CGUCGa--GCG-----------UGCGCCGCg -5'
23596 5' -60.2 NC_005261.1 + 1304 0.68 0.578193
Target:  5'- -cCCGUCgccgGCGGCg-GCACGCGcuccgggacgccgccGCGCc -3'
miRNA:   3'- caGGCAGa---CGUCGagCGUGCGC---------------CGCG- -5'
23596 5' -60.2 NC_005261.1 + 39439 0.68 0.584156
Target:  5'- --gCGUCcGCAGggccccgagcCUC-CGCGCGGCGCg -3'
miRNA:   3'- cagGCAGaCGUC----------GAGcGUGCGCCGCG- -5'
23596 5' -60.2 NC_005261.1 + 59725 0.68 0.584156
Target:  5'- -gCCGggcgGCAGCggcgGCGCGCGGcCGCc -3'
miRNA:   3'- caGGCaga-CGUCGag--CGUGCGCC-GCG- -5'
23596 5' -60.2 NC_005261.1 + 123835 0.68 0.584156
Target:  5'- --gCGUCgUGCAGCgUCGCGCugccuaGCGGCaGCc -3'
miRNA:   3'- cagGCAG-ACGUCG-AGCGUG------CGCCG-CG- -5'
23596 5' -60.2 NC_005261.1 + 124243 0.68 0.594121
Target:  5'- -gCCGcCgcggGCAGg-CGcCGCGCGGCGCc -3'
miRNA:   3'- caGGCaGa---CGUCgaGC-GUGCGCCGCG- -5'
23596 5' -60.2 NC_005261.1 + 104492 0.68 0.594121
Target:  5'- cGUCCacggcGUCgUGCAGC-CGCucCGUGGCGg -3'
miRNA:   3'- -CAGG-----CAG-ACGUCGaGCGu-GCGCCGCg -5'
23596 5' -60.2 NC_005261.1 + 87485 0.68 0.594121
Target:  5'- gGUUCGgcgCgGCcguGCUgGCGCGCaGGCGCu -3'
miRNA:   3'- -CAGGCa--GaCGu--CGAgCGUGCG-CCGCG- -5'
23596 5' -60.2 NC_005261.1 + 105366 0.68 0.604112
Target:  5'- -gCCGUgacagGCGGCgCGCGCGgGuGCGCg -3'
miRNA:   3'- caGGCAga---CGUCGaGCGUGCgC-CGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.