miRNA display CGI


Results 41 - 60 of 275 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23596 5' -60.2 NC_005261.1 + 53050 0.66 0.694054
Target:  5'- -gCCGUCgggaggGCAguGCUC-CACcccgggGCGGCGCa -3'
miRNA:   3'- caGGCAGa-----CGU--CGAGcGUG------CGCCGCG- -5'
23596 5' -60.2 NC_005261.1 + 56083 0.66 0.694054
Target:  5'- aGUCCG-CUcgcuacuuccaGCGGCUCcuGCGCgaGCGGCGg -3'
miRNA:   3'- -CAGGCaGA-----------CGUCGAG--CGUG--CGCCGCg -5'
23596 5' -60.2 NC_005261.1 + 84329 0.66 0.694054
Target:  5'- cGUCCGgg-GCcGCgcucgCGCACGCgccaaagucgaaGGCGCc -3'
miRNA:   3'- -CAGGCagaCGuCGa----GCGUGCG------------CCGCG- -5'
23596 5' -60.2 NC_005261.1 + 11036 0.66 0.694054
Target:  5'- -cCCGUCccccgGCGGCacUCGgGCGCcgcccaGGCGCc -3'
miRNA:   3'- caGGCAGa----CGUCG--AGCgUGCG------CCGCG- -5'
23596 5' -60.2 NC_005261.1 + 99534 0.66 0.694054
Target:  5'- -aCCGUCgaggGC-GCgUC-CAgGCGGCGCg -3'
miRNA:   3'- caGGCAGa---CGuCG-AGcGUgCGCCGCG- -5'
23596 5' -60.2 NC_005261.1 + 109360 0.66 0.68415
Target:  5'- -gCCGUCcaGCcGCUCGaGCGCGGCcCa -3'
miRNA:   3'- caGGCAGa-CGuCGAGCgUGCGCCGcG- -5'
23596 5' -60.2 NC_005261.1 + 106106 0.66 0.68415
Target:  5'- --aCGUCgGcCGGCgUCGCcgGCGCGcGCGCg -3'
miRNA:   3'- cagGCAGaC-GUCG-AGCG--UGCGC-CGCG- -5'
23596 5' -60.2 NC_005261.1 + 70860 0.66 0.68415
Target:  5'- gGUCCagg-GCGGC-CGC-CGUGGCGUg -3'
miRNA:   3'- -CAGGcagaCGUCGaGCGuGCGCCGCG- -5'
23596 5' -60.2 NC_005261.1 + 59043 0.66 0.68415
Target:  5'- -gCCGcCgcGCgAGCUcagCGCGCGCGGcCGCg -3'
miRNA:   3'- caGGCaGa-CG-UCGA---GCGUGCGCC-GCG- -5'
23596 5' -60.2 NC_005261.1 + 53854 0.66 0.68415
Target:  5'- uUCCGgcaaGC-GCUCcaGCGCGGCGCg -3'
miRNA:   3'- cAGGCaga-CGuCGAGcgUGCGCCGCG- -5'
23596 5' -60.2 NC_005261.1 + 39336 0.66 0.68415
Target:  5'- -gCCG-CcGCGGCcaagcUGCGCGCGGCGg -3'
miRNA:   3'- caGGCaGaCGUCGa----GCGUGCGCCGCg -5'
23596 5' -60.2 NC_005261.1 + 120644 0.66 0.68415
Target:  5'- -cCUGUgcCUGCGGCgcaagGCGCG-GGCGCg -3'
miRNA:   3'- caGGCA--GACGUCGag---CGUGCgCCGCG- -5'
23596 5' -60.2 NC_005261.1 + 128819 0.66 0.68415
Target:  5'- cUCgCG-CUGCGGCUgaCGCucGCGCGGCu- -3'
miRNA:   3'- cAG-GCaGACGUCGA--GCG--UGCGCCGcg -5'
23596 5' -60.2 NC_005261.1 + 129175 0.66 0.68415
Target:  5'- -aCCGcucguugCUGCcGCaggccaGCGCGUGGCGCa -3'
miRNA:   3'- caGGCa------GACGuCGag----CGUGCGCCGCG- -5'
23596 5' -60.2 NC_005261.1 + 250 0.66 0.68415
Target:  5'- -cCCGgCUGCGGCg-GCGgcUGCGGCGg -3'
miRNA:   3'- caGGCaGACGUCGagCGU--GCGCCGCg -5'
23596 5' -60.2 NC_005261.1 + 82335 0.66 0.68415
Target:  5'- cUCCGcguagcgCUGCcggcgcacgucGGCgucggCGCGCGCGcGCGCc -3'
miRNA:   3'- cAGGCa------GACG-----------UCGa----GCGUGCGC-CGCG- -5'
23596 5' -60.2 NC_005261.1 + 103179 0.66 0.68415
Target:  5'- -gCCGgucCUGCAcgcccGCggucaCGCGCgGCGGCGCc -3'
miRNA:   3'- caGGCa--GACGU-----CGa----GCGUG-CGCCGCG- -5'
23596 5' -60.2 NC_005261.1 + 133929 0.66 0.68415
Target:  5'- cGUCgCGUUcgUGUAcCUgCGCcagGCGCGGCGCa -3'
miRNA:   3'- -CAG-GCAG--ACGUcGA-GCG---UGCGCCGCG- -5'
23596 5' -60.2 NC_005261.1 + 137933 0.66 0.68415
Target:  5'- -cCCGgCUGCGGCg-GCGgcUGCGGCGg -3'
miRNA:   3'- caGGCaGACGUCGagCGU--GCGCCGCg -5'
23596 5' -60.2 NC_005261.1 + 37224 0.66 0.68415
Target:  5'- -cCCG-Cg--GGCUUGCgcgGCGCGGCGCg -3'
miRNA:   3'- caGGCaGacgUCGAGCG---UGCGCCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.