miRNA display CGI


Results 61 - 80 of 275 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23596 5' -60.2 NC_005261.1 + 82335 0.66 0.68415
Target:  5'- cUCCGcguagcgCUGCcggcgcacgucGGCgucggCGCGCGCGcGCGCc -3'
miRNA:   3'- cAGGCa------GACG-----------UCGa----GCGUGCGC-CGCG- -5'
23596 5' -60.2 NC_005261.1 + 250 0.66 0.68415
Target:  5'- -cCCGgCUGCGGCg-GCGgcUGCGGCGg -3'
miRNA:   3'- caGGCaGACGUCGagCGU--GCGCCGCg -5'
23596 5' -60.2 NC_005261.1 + 129175 0.66 0.68415
Target:  5'- -aCCGcucguugCUGCcGCaggccaGCGCGUGGCGCa -3'
miRNA:   3'- caGGCa------GACGuCGag----CGUGCGCCGCG- -5'
23596 5' -60.2 NC_005261.1 + 128819 0.66 0.68415
Target:  5'- cUCgCG-CUGCGGCUgaCGCucGCGCGGCu- -3'
miRNA:   3'- cAG-GCaGACGUCGA--GCG--UGCGCCGcg -5'
23596 5' -60.2 NC_005261.1 + 45587 0.66 0.683157
Target:  5'- -cCCGUCggugaucacgGCgaucuaccacaccGGCggCGCgGCGCGGCGCg -3'
miRNA:   3'- caGGCAGa---------CG-------------UCGa-GCG-UGCGCCGCG- -5'
23596 5' -60.2 NC_005261.1 + 72733 0.66 0.674206
Target:  5'- cGUCCG-CgcggGCGGCcCGCAUgGCGGgcCGCa -3'
miRNA:   3'- -CAGGCaGa---CGUCGaGCGUG-CGCC--GCG- -5'
23596 5' -60.2 NC_005261.1 + 114324 0.66 0.674206
Target:  5'- aGUCCGgc-GCaagguggacuGGCUCGa--GCGGCGCg -3'
miRNA:   3'- -CAGGCagaCG----------UCGAGCgugCGCCGCG- -5'
23596 5' -60.2 NC_005261.1 + 120597 0.66 0.674206
Target:  5'- -gCCGUCgccUGCGGCcucggCGC-CGUGGgGCu -3'
miRNA:   3'- caGGCAG---ACGUCGa----GCGuGCGCCgCG- -5'
23596 5' -60.2 NC_005261.1 + 76730 0.66 0.674206
Target:  5'- -cCCGcagCUgGCcgacguGCUCGCggACGUGGCGCa -3'
miRNA:   3'- caGGCa--GA-CGu-----CGAGCG--UGCGCCGCG- -5'
23596 5' -60.2 NC_005261.1 + 78831 0.66 0.674206
Target:  5'- aUCgGgagCUGCGGUaCGC-CgGCGGCGCc -3'
miRNA:   3'- cAGgCa--GACGUCGaGCGuG-CGCCGCG- -5'
23596 5' -60.2 NC_005261.1 + 90392 0.66 0.674206
Target:  5'- -cCCGcCgGCggGGCUgGCGCcCGGCGCg -3'
miRNA:   3'- caGGCaGaCG--UCGAgCGUGcGCCGCG- -5'
23596 5' -60.2 NC_005261.1 + 92598 0.66 0.674206
Target:  5'- -------cGCAGC-CGCuCGCGGCGCg -3'
miRNA:   3'- caggcagaCGUCGaGCGuGCGCCGCG- -5'
23596 5' -60.2 NC_005261.1 + 45091 0.66 0.673209
Target:  5'- cGUCCGUCacgcgccugcgcgUGgAGCcggGCACG-GGCGCg -3'
miRNA:   3'- -CAGGCAG-------------ACgUCGag-CGUGCgCCGCG- -5'
23596 5' -60.2 NC_005261.1 + 20536 0.66 0.670218
Target:  5'- cUCCGaccgcgcUCUGCuggacguggcggcgGGCUgCGCA-GCGGCGCc -3'
miRNA:   3'- cAGGC-------AGACG--------------UCGA-GCGUgCGCCGCG- -5'
23596 5' -60.2 NC_005261.1 + 118778 0.67 0.664228
Target:  5'- -gCCGacgCUGCAGacgGCGCGCugauGGCGCa -3'
miRNA:   3'- caGGCa--GACGUCgagCGUGCG----CCGCG- -5'
23596 5' -60.2 NC_005261.1 + 31486 0.67 0.664228
Target:  5'- -gCCGgugCgcgGCGGgcuCUCGCAccugcuCGCGGCGCu -3'
miRNA:   3'- caGGCa--Ga--CGUC---GAGCGU------GCGCCGCG- -5'
23596 5' -60.2 NC_005261.1 + 113876 0.67 0.664228
Target:  5'- cUCCGggugccacCUGUAGCg-GCgACGCGGCGg -3'
miRNA:   3'- cAGGCa-------GACGUCGagCG-UGCGCCGCg -5'
23596 5' -60.2 NC_005261.1 + 127897 0.67 0.658229
Target:  5'- -cCCGUCggGCccgggccugggcuugGGCUCGgGCccgcucgauGCGGCGCa -3'
miRNA:   3'- caGGCAGa-CG---------------UCGAGCgUG---------CGCCGCG- -5'
23596 5' -60.2 NC_005261.1 + 127837 0.67 0.654225
Target:  5'- -gCCG-CgaGCAGCggacggggCGguCGCGGCGCc -3'
miRNA:   3'- caGGCaGa-CGUCGa-------GCguGCGCCGCG- -5'
23596 5' -60.2 NC_005261.1 + 109850 0.67 0.654225
Target:  5'- -gCCGUUggugGCGGCUC-CugGgGGCaGCg -3'
miRNA:   3'- caGGCAGa---CGUCGAGcGugCgCCG-CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.