miRNA display CGI


Results 101 - 120 of 275 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23596 5' -60.2 NC_005261.1 + 99214 0.67 0.634178
Target:  5'- gGUCCGaggacaCcGCGGCagGCGCGuCGGCGUc -3'
miRNA:   3'- -CAGGCa-----GaCGUCGagCGUGC-GCCGCG- -5'
23596 5' -60.2 NC_005261.1 + 56432 0.67 0.634178
Target:  5'- -cCCGcCUGCGGag-GCG-GCGGCGCa -3'
miRNA:   3'- caGGCaGACGUCgagCGUgCGCCGCG- -5'
23596 5' -60.2 NC_005261.1 + 62291 0.67 0.634178
Target:  5'- aUCaCGUCgGCGccgcGCggGCGCGCGGCGg -3'
miRNA:   3'- cAG-GCAGaCGU----CGagCGUGCGCCGCg -5'
23596 5' -60.2 NC_005261.1 + 65860 0.67 0.633174
Target:  5'- gGUCCG-CgGCGGCUUGUACagccccaGCGGCa- -3'
miRNA:   3'- -CAGGCaGaCGUCGAGCGUG-------CGCCGcg -5'
23596 5' -60.2 NC_005261.1 + 106557 0.67 0.628159
Target:  5'- cGUCCGggccgGCgcgcgccggccccggGGC-CGcCGCGCGGCGCu -3'
miRNA:   3'- -CAGGCaga--CG---------------UCGaGC-GUGCGCCGCG- -5'
23596 5' -60.2 NC_005261.1 + 106792 0.67 0.624147
Target:  5'- -gCCGUCUGC-GCcCGCAC-CaGCGCc -3'
miRNA:   3'- caGGCAGACGuCGaGCGUGcGcCGCG- -5'
23596 5' -60.2 NC_005261.1 + 64793 0.67 0.624147
Target:  5'- cGUgCGgc-GCAGCgccguucaCGCGCGCGcGCGCg -3'
miRNA:   3'- -CAgGCagaCGUCGa-------GCGUGCGC-CGCG- -5'
23596 5' -60.2 NC_005261.1 + 106168 0.67 0.624147
Target:  5'- cUCCGcgCUaauacuagGgGGCgccgCGCGCGUGGCGCc -3'
miRNA:   3'- cAGGCa-GA--------CgUCGa---GCGUGCGCCGCG- -5'
23596 5' -60.2 NC_005261.1 + 134196 0.67 0.624147
Target:  5'- -cCUGgc-GCGGCUCgGCGCGCGGguCGCg -3'
miRNA:   3'- caGGCagaCGUCGAG-CGUGCGCC--GCG- -5'
23596 5' -60.2 NC_005261.1 + 135007 0.67 0.624147
Target:  5'- -cCUGgc-GCGGCgggccCGCACGCGGcCGCg -3'
miRNA:   3'- caGGCagaCGUCGa----GCGUGCGCC-GCG- -5'
23596 5' -60.2 NC_005261.1 + 37354 0.67 0.624147
Target:  5'- aUCCG-CgggcGguGCUCGCcgcccgAgGCGGCGCu -3'
miRNA:   3'- cAGGCaGa---CguCGAGCG------UgCGCCGCG- -5'
23596 5' -60.2 NC_005261.1 + 43368 0.67 0.623145
Target:  5'- -gCCG-CUGCGGCg-GCAucggccuCGCGGUGCc -3'
miRNA:   3'- caGGCaGACGUCGagCGU-------GCGCCGCG- -5'
23596 5' -60.2 NC_005261.1 + 77250 0.67 0.623145
Target:  5'- -gCCGggCUcaaaaggGCGcGCUCGCGgGCGGCGUc -3'
miRNA:   3'- caGGCa-GA-------CGU-CGAGCGUgCGCCGCG- -5'
23596 5' -60.2 NC_005261.1 + 115908 0.67 0.615125
Target:  5'- -gCCGUC-GuCAGCgccggccgccgcgucCGCGCGCGGgGCa -3'
miRNA:   3'- caGGCAGaC-GUCGa--------------GCGUGCGCCgCG- -5'
23596 5' -60.2 NC_005261.1 + 19818 0.67 0.614123
Target:  5'- -gCCGgucgaUGCaaaaguucAGCgCGCGCGCGGCGUc -3'
miRNA:   3'- caGGCag---ACG--------UCGaGCGUGCGCCGCG- -5'
23596 5' -60.2 NC_005261.1 + 111751 0.67 0.614123
Target:  5'- aGUgCGg--GCAGCUCGUgcaccuGCGCuGCGCg -3'
miRNA:   3'- -CAgGCagaCGUCGAGCG------UGCGcCGCG- -5'
23596 5' -60.2 NC_005261.1 + 1188 0.67 0.614123
Target:  5'- -gCCGgggCcGgGGC-CGgGCGCGGCGCg -3'
miRNA:   3'- caGGCa--GaCgUCGaGCgUGCGCCGCG- -5'
23596 5' -60.2 NC_005261.1 + 42599 0.67 0.614123
Target:  5'- --gCGgcaaaagGCAGCUCGC--GCGGCGCa -3'
miRNA:   3'- cagGCaga----CGUCGAGCGugCGCCGCG- -5'
23596 5' -60.2 NC_005261.1 + 54131 0.67 0.614123
Target:  5'- -cUCGUCccacgGCAcGC-CGCACGCGGCcguGCg -3'
miRNA:   3'- caGGCAGa----CGU-CGaGCGUGCGCCG---CG- -5'
23596 5' -60.2 NC_005261.1 + 86928 0.67 0.614123
Target:  5'- -aCCG-CcGCcGC-CGCGCGCGGCGg -3'
miRNA:   3'- caGGCaGaCGuCGaGCGUGCGCCGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.