miRNA display CGI


Results 1 - 20 of 275 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23596 5' -60.2 NC_005261.1 + 250 0.66 0.68415
Target:  5'- -cCCGgCUGCGGCg-GCGgcUGCGGCGg -3'
miRNA:   3'- caGGCaGACGUCGagCGU--GCGCCGCg -5'
23596 5' -60.2 NC_005261.1 + 1188 0.67 0.614123
Target:  5'- -gCCGgggCcGgGGC-CGgGCGCGGCGCg -3'
miRNA:   3'- caGGCa--GaCgUCGaGCgUGCGCCGCG- -5'
23596 5' -60.2 NC_005261.1 + 1304 0.68 0.578193
Target:  5'- -cCCGUCgccgGCGGCg-GCACGCGcuccgggacgccgccGCGCc -3'
miRNA:   3'- caGGCAGa---CGUCGagCGUGCGC---------------CGCG- -5'
23596 5' -60.2 NC_005261.1 + 1409 0.66 0.694054
Target:  5'- -gCCG-CgGCGGCggCGgGgGCGGCGCc -3'
miRNA:   3'- caGGCaGaCGUCGa-GCgUgCGCCGCG- -5'
23596 5' -60.2 NC_005261.1 + 1684 0.68 0.574225
Target:  5'- -cCCGUCgagccgcgGCAGCacgCGCugccgguacucGCGCGGCGg -3'
miRNA:   3'- caGGCAGa-------CGUCGa--GCG-----------UGCGCCGCg -5'
23596 5' -60.2 NC_005261.1 + 1829 0.66 0.723431
Target:  5'- --gCGUaaGCGGCcucggCGCGCGCgaaGGCGCc -3'
miRNA:   3'- cagGCAgaCGUCGa----GCGUGCG---CCGCG- -5'
23596 5' -60.2 NC_005261.1 + 1908 0.66 0.703907
Target:  5'- -gCCG-CUcaGGC-CaGCGCGCGGCGCa -3'
miRNA:   3'- caGGCaGAcgUCGaG-CGUGCGCCGCG- -5'
23596 5' -60.2 NC_005261.1 + 2378 0.71 0.39867
Target:  5'- -gCCG-CcGCAGCggcgCGCugGCGGCGa -3'
miRNA:   3'- caGGCaGaCGUCGa---GCGugCGCCGCg -5'
23596 5' -60.2 NC_005261.1 + 3537 0.71 0.41557
Target:  5'- -gCCGcCUcggcgcGCAGCgcggCGgGCGCGGCGCc -3'
miRNA:   3'- caGGCaGA------CGUCGa---GCgUGCGCCGCG- -5'
23596 5' -60.2 NC_005261.1 + 3728 0.7 0.477992
Target:  5'- -gCCG-CUGCcGgaCGCGCcgGCGGCGCa -3'
miRNA:   3'- caGGCaGACGuCgaGCGUG--CGCCGCG- -5'
23596 5' -60.2 NC_005261.1 + 3796 0.69 0.524313
Target:  5'- gGUCCGccagCUcGCGcagccGCUCGCGCGCugccgcgggcccgGGCGCu -3'
miRNA:   3'- -CAGGCa---GA-CGU-----CGAGCGUGCG-------------CCGCG- -5'
23596 5' -60.2 NC_005261.1 + 3882 0.71 0.390387
Target:  5'- --aCGgcgcGCAGCUCGgcgaGCGCGGCGCg -3'
miRNA:   3'- cagGCaga-CGUCGAGCg---UGCGCCGCG- -5'
23596 5' -60.2 NC_005261.1 + 4149 0.67 0.654225
Target:  5'- -gCCG-CUGCAGCagGCGCGCcaGCuGCa -3'
miRNA:   3'- caGGCaGACGUCGagCGUGCGc-CG-CG- -5'
23596 5' -60.2 NC_005261.1 + 4193 0.71 0.389565
Target:  5'- uUCgCGcUCUGCAGCcaggccaUgGCGuCGCGGCGCg -3'
miRNA:   3'- cAG-GC-AGACGUCG-------AgCGU-GCGCCGCG- -5'
23596 5' -60.2 NC_005261.1 + 4459 0.69 0.534953
Target:  5'- cUCCagcggCgGCGGCcCGuCGCGCGGCGCc -3'
miRNA:   3'- cAGGca---GaCGUCGaGC-GUGCGCCGCG- -5'
23596 5' -60.2 NC_005261.1 + 10488 0.7 0.477992
Target:  5'- -cCCG-CUGCaccGGCUuuUGCGCGCGGcCGCc -3'
miRNA:   3'- caGGCaGACG---UCGA--GCGUGCGCC-GCG- -5'
23596 5' -60.2 NC_005261.1 + 11036 0.66 0.694054
Target:  5'- -cCCGUCccccgGCGGCacUCGgGCGCcgcccaGGCGCc -3'
miRNA:   3'- caGGCAGa----CGUCG--AGCgUGCG------CCGCG- -5'
23596 5' -60.2 NC_005261.1 + 11925 0.73 0.328294
Target:  5'- -gCCGgcggCUGCGGCggccCGCGcCGCGGCGg -3'
miRNA:   3'- caGGCa---GACGUCGa---GCGU-GCGCCGCg -5'
23596 5' -60.2 NC_005261.1 + 12082 0.73 0.321066
Target:  5'- cGUCCG-CgccgggGCGGCUCaaagGCGCGGCGCc -3'
miRNA:   3'- -CAGGCaGa-----CGUCGAGcg--UGCGCCGCG- -5'
23596 5' -60.2 NC_005261.1 + 12291 0.66 0.694054
Target:  5'- aGUCCGcgUCcGCcGCggGCACG-GGCGCg -3'
miRNA:   3'- -CAGGC--AGaCGuCGagCGUGCgCCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.